hbc / tinyatlas
A tiny cell atlas for commonly sequenced organisms.
☆28Updated 8 months ago
Alternatives and similar repositories for tinyatlas:
Users that are interested in tinyatlas are comparing it to the libraries listed below
- ☆61Updated last year
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆75Updated 3 weeks ago
- R implementation of MULTI-seq sample classification workflow☆61Updated last year
- ☆78Updated last year
- ☆57Updated 4 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated last year
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆92Updated 4 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆91Updated 2 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- ☆104Updated 2 weeks ago
- SNV calling from single cell sequencing☆94Updated 4 months ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆97Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- ☆46Updated 2 years ago
- ☆59Updated 5 years ago
- Analysis pipeline for ATAC-seq data☆48Updated last year
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆31Updated 5 years ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆98Updated 2 weeks ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- ☆42Updated 3 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated last year
- SCSA: cell type annotation for single-cell RNA-seq data☆89Updated last year
- A R package for advanced single cell data viz☆66Updated last year
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.☆18Updated 3 years ago