A tiny cell atlas for commonly sequenced organisms.
☆29Jul 9, 2024Updated last year
Alternatives and similar repositories for tinyatlas
Users that are interested in tinyatlas are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- IKAP - Identifying K mAjor cell Population groups in single-cell RNA-seq analysis☆18Mar 16, 2020Updated 6 years ago
- shifts hg19/38 genomic position for feasible input format.☆12Jun 8, 2023Updated 2 years ago
- ☆18May 12, 2023Updated 2 years ago
- Gene orthologs for model organisms in a tidy data format☆14Sep 29, 2022Updated 3 years ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Oct 15, 2019Updated 6 years ago
- A snakemake pipeline for 10X genomics cellranger☆22Oct 13, 2025Updated 5 months ago
- ☆14Jul 26, 2024Updated last year
- R package for integrating and comparing multiple single cell genomic datasets☆11Dec 27, 2020Updated 5 years ago
- DUBStepR (Determining the Underlying Basis using Step-wise Regression) is a feature selection algorithm for cell type identification in s…☆11May 26, 2021Updated 4 years ago
- Gossamer bioinformatics suite☆23Dec 4, 2024Updated last year
- Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.☆10Mar 6, 2025Updated last year
- ☆22Aug 11, 2020Updated 5 years ago
- LAVA (LAMP Assay Versatile Analysis) is an extendable open-source Loop-mediated isothermal AMPlification (LAMP)☆20Aug 24, 2023Updated 2 years ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Feb 21, 2023Updated 3 years ago
- Generate Dose-Response Curves in Python☆13Mar 4, 2026Updated 2 weeks ago
- ☆22Jul 27, 2023Updated 2 years ago
- Software to study why most genes are ignored☆15Sep 18, 2018Updated 7 years ago
- ☆12Updated this week
- A Shiny web app for mapping datasets using Seurat v4☆145Nov 5, 2024Updated last year
- Python Client Package for WikiPathways☆24Mar 15, 2026Updated last week
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆16Jun 25, 2025Updated 8 months ago
- Anno is a variant annotation tool☆24May 18, 2016Updated 9 years ago
- ☆10Sep 23, 2024Updated last year
- Gene Ontology (GO) enrichment analysis☆12Aug 7, 2023Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆39Nov 14, 2022Updated 3 years ago
- Junction centric alternative splicing translator☆21Oct 31, 2022Updated 3 years ago
- CODEX data processing code☆12Jul 1, 2025Updated 8 months ago
- Single cell analysis tools for expression from RNA-seq in R☆10Feb 3, 2016Updated 10 years ago
- BANKSY: spatial clustering☆138Oct 15, 2025Updated 5 months ago
- Python script for calling SNPs, MNPs, and indels in mitochondrial DNA.☆10Apr 19, 2016Updated 9 years ago
- Shiny browser for single cell RNAseq data☆12Oct 7, 2022Updated 3 years ago
- Single-cell Transposable Element Locus Level Analysis of scRNA Sequencing☆21Oct 28, 2025Updated 4 months ago
- ☆12Mar 1, 2020Updated 6 years ago
- ☆16Dec 3, 2024Updated last year
- A Bioconductor package to retrieve and analyze data from the Human Protein Atlas☆39Dec 7, 2025Updated 3 months ago
- Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022☆10Jan 12, 2022Updated 4 years ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆252Jan 10, 2026Updated 2 months ago
- ☆16Jun 5, 2022Updated 3 years ago
- Repository containing the scripts regarding analyses in Zufferey & Tavernari et al.☆10Feb 22, 2021Updated 5 years ago