vikramparalkar / rDNA-Mapping-GenomesLinks
Human and mouse genome assemblies customized for rDNA mapping
β10Updated 3 months ago
Alternatives and similar repositories for rDNA-Mapping-Genomes
Users that are interested in rDNA-Mapping-Genomes are comparing it to the libraries listed below
Sorting:
- knowledge-based genotyping of cancer hotspots from the tumor BAM filesβ21Updated 3 years ago
- Isoform-level functional RNA-Seq analysis π§¬β25Updated 3 weeks ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.β16Updated 3 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq datβ¦β15Updated 2 months ago
- β28Updated 6 months ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.β22Updated 2 years ago
- Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis fβ¦β20Updated 4 years ago
- Differential Hi-C Data Analysis Workshop https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.76β15Updated 4 years ago
- Isoform co-usage networks from single-cell RNA-seq dataβ16Updated last year
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in Rβ11Updated 3 years ago
- R package wrapping bedtoolsβ41Updated 3 months ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.β16Updated 3 years ago
- Analysis notebooks and data for AML hierarchies paperβ16Updated 2 years ago
- Merge fastq files split over lanesβ20Updated 7 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer driversβ15Updated 6 years ago
- An R for fast and flexible DNA methylation analysisβ31Updated this week
- Flexible Bayesian inference of mutational signaturesβ35Updated 2 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paperβ24Updated 2 years ago
- workshop website on readthedocsβ19Updated last week
- Chromatin ACcessibility and Transcriptomics Unifying Softwareβ16Updated 8 months ago
- Snakemake pipeline for running MAJIQβ23Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seqβ22Updated last year
- Motif manipulation functions for R.β29Updated 2 months ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.β¦β16Updated 4 years ago
- A tidy interface for coverage analysisβ29Updated 5 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutationsβ36Updated 3 years ago
- β22Updated last year
- a set of NGS pipelinesβ24Updated this week
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing dataβ17Updated 5 years ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:β20Updated last year