Alternatives and similar repositories for snapperdb:

Users that are interested in snapperdb are comparing it to the libraries listed below

• ukhsa-collaboration / PneumoCaT
  Pneumococcal Capsular Typing tool for NGS data
  ☆16Updated 4 years ago
• tseemann / scapper
  Whole genome core alignments from multiple draft genomes
  ☆13Updated 8 years ago
• lmrodriguezr / nonpareil
  Estimate metagenomic coverage and sequence diversity
  ☆51Updated 9 months ago
• rrwick / Rebaler
  reference-based long read assemblies of bacterial genomes
  ☆49Updated 3 years ago
• katholt / RedDog
  ☆36Updated 3 years ago
• rrwick / Verticall
  Recombination-free trees
  ☆58Updated last month
• LomanLab / EBAME18
  Long read metagenomics practical at EBAME18
  ☆18Updated 6 years ago
• simonrharris / SKA
  Split Kmer Analysis
  ☆63Updated 2 years ago
• jordanlab / stringMLST
  Fast k-mer based tool for multi locus sequence typing (MLST)
  ☆44Updated 4 years ago
• rrwick / Bacsort
  a collection of scripts for organising bacterial genomes by species
  ☆76Updated 3 years ago
• phac-nml / sistr_cmd
  SISTR (Salmonella In Silico Typing Resource) command-line tool
  ☆27Updated 2 weeks ago
• flass / pantagruel
  a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome
  ☆48Updated 2 years ago
• zheminzhou / EToKi
  all methods related to Enterobase
  ☆42Updated 8 months ago
• bioinfo-ut / PlasmidSeeker
  A k-mer based program for the identification of known plasmids from whole-genome sequencing reads
  ☆35Updated 4 years ago
• WGS-TB / MentaLiST
  The MLST pipeline developed by the PathOGiST research group
  ☆36Updated last year
• andrewjpage / tiptoft
  Predict plasmids from uncorrected long read data
  ☆39Updated 5 years ago
• CDCgov / seqsender
  Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
  ☆38Updated 3 weeks ago
• rrwick / Assembly-Dereplicator
  A tool for removing redundant genomes from a set of assemblies
  ☆71Updated last year
• lskatz / lskScripts
  A placeholder for all my random scripts. Some scripts might eventually graduate and go to their own projects, so don't be surprised if a…
  ☆17Updated 7 months ago
• aldertzomer / RFPlasmid
  Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf
  ☆48Updated last year
• marbl / harvest
  ☆52Updated 3 years ago
• tseemann / cgmlst-dists
  🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables
  ☆27Updated last year
• asmngs / asmngs20
  ASMNGS20 - 2020 Conference Details
  ☆15Updated 2 years ago
• metashot / prok-quality
  Assessing the quality of prokaryotic genomes, filtering and dereplication
  ☆11Updated 2 years ago
• andrewjpage / krocus
  Predict MLST directly from uncorrected long reads
  ☆27Updated 3 years ago
• chjp / ANI
  Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes
  ☆19Updated 3 years ago
• jizhang-nz / fast-GeP
  Fast genealogical relationship evaluation of bacterial isolates with WGS data.
  ☆12Updated 3 years ago
• richardmleggett / MARTi
  Metagenomic Analysis in Real Time
  ☆24Updated last month
• jts / assembly_accuracy
  tools for assessing the accuracy of genome assemblies
  ☆34Updated last year
• bvalot / pyMLST
  whole genome MLST analysis
  ☆42Updated last month