☆23Apr 2, 2026Updated 5 months ago
Alternatives and similar repositories for snapperdb
Users that are interested in snapperdb are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Static website for the PH4AGE alliance☆14Oct 27, 2023Updated 2 years ago
- Official place for proposals and details around monkeypox virus lineage designations☆23Jul 7, 2026Updated last month
- Fast k-mer based tool for multi locus sequence typing (MLST)☆47Sep 3, 2020Updated 6 years ago
- Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.☆76Updated this week
- A taxonomic classifier of plasmids☆29Jul 7, 2021Updated 5 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- all methods related to Enterobase☆44Sep 4, 2024Updated last year
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations☆26Aug 26, 2024Updated 2 years ago
- In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis☆16Feb 19, 2026Updated 6 months ago
- "Reads to report" for public health and clinical microbiology☆144Dec 9, 2025Updated 8 months ago
- Hierarchical clustering of cgMLST☆13Nov 20, 2023Updated 2 years ago
- ☆15Dec 16, 2021Updated 4 years ago
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- Create a tree using Mash distances☆188Oct 24, 2023Updated 2 years ago
- The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data in a standardized f…☆14Apr 21, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A placeholder for all my random scripts. Some scripts might eventually graduate and go to their own projects, so don't be surprised if a…☆17Nov 24, 2025Updated 9 months ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- a short-read polishing tool for long-read assemblies☆224Jul 28, 2026Updated last month
- Toolkit to convert the output of common variant calling programs to VCF☆23Dec 7, 2022Updated 3 years ago
- Archived - please see updated sccmec tool at link below☆13Aug 30, 2024Updated 2 years ago
- Repository with all my container recipes 👩🍳☆17Sep 9, 2024Updated last year
- A collection of plots for long read sequencing FastQ files from devices like Oxford Nanopore's MinION and PromethION.☆12Feb 14, 2023Updated 3 years ago
- Split k-mer analysis – version 2☆105Jul 9, 2026Updated last month
- Intra-species bacterial contamination detection☆26Jul 10, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Plasmid and antimicrobial resistance pipeline☆16Apr 30, 2026Updated 4 months ago
- ☆33Sep 20, 2017Updated 8 years ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Jul 2, 2026Updated 2 months ago
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 10 months ago
- A curated database of completed assemblies with taxonomy IDs☆53Updated this week
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated 2 years ago
- ☆16Oct 2, 2019Updated 6 years ago
- ☆22Updated this week
- BSR-Based Allele Calling Algorithm☆150Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆109Jun 2, 2026Updated 3 months ago
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated 2 months ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆71Feb 23, 2026Updated 6 months ago
- Digenome-toolkit ver2.☆15Nov 1, 2021Updated 4 years ago
- Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)☆12Aug 6, 2023Updated 3 years ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Dec 2, 2024Updated last year
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆91Jul 17, 2026Updated last month