ukhsa-collaboration / snapperdbLinks
☆24Updated 7 years ago
Alternatives and similar repositories for snapperdb
Users that are interested in snapperdb are comparing it to the libraries listed below
Sorting:
- Pneumococcal Capsular Typing tool for NGS data☆18Updated 4 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 4 years ago
- ☆37Updated 3 years ago
- Split Kmer Analysis☆66Updated 3 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Estimate metagenomic coverage and sequence diversity☆57Updated this week
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆100Updated this week
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 5 years ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated 3 months ago
- Long read metagenomics practical at EBAME18☆18Updated 7 years ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆60Updated 2 weeks ago
- all methods related to Enterobase☆43Updated last year
- Predict plasmids from uncorrected long read data☆41Updated last month
- Pipeline for analysing intergenic regions in bacteria☆40Updated 6 years ago
- tools for assessing the accuracy of genome assemblies☆35Updated last year
- Mapping-Assisted Targeted-Assembly for Metagenomics☆24Updated 8 months ago
- Intra-species bacterial contamination detection☆25Updated 10 months ago
- ✏️ Genome assembly polishing & SNV detection☆71Updated 2 months ago
- Recombination-free trees☆62Updated 3 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- A tool for Racon polishing of miniasm assemblies☆78Updated 3 months ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 4 years ago
- SeqSero2☆39Updated 2 months ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- ☆33Updated 8 years ago
- Rapid determination of appropriate reference genomes.☆97Updated 10 months ago
- Whole genome core alignments from multiple draft genomes☆13Updated 9 years ago