GenEpiO / genepioLinks
The Genomic Epidemiology Application Ontology describes the genomics, laboratory, clinical and epidemiological contextual information required to support data sharing and integration for foodborne infectious disease surveillance and outbreak investigations.
☆23Updated 3 weeks ago
Alternatives and similar repositories for genepio
Users that are interested in genepio are comparing it to the libraries listed below
Sorting:
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 4 months ago
- ☆31Updated 4 years ago
- MGnify API toolkit☆19Updated 9 months ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 3 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- Python bindings for the TaxonKit library☆40Updated 4 months ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆43Updated 2 months ago
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Updated last month
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated last month
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆77Updated 4 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Parse GFF3 into Pandas dataframes☆30Updated last year
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆39Updated 2 weeks ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Updated 2 months ago
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆32Updated last year
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆26Updated 3 months ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 3 years ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Updated 11 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆29Updated 6 months ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 8 months ago
- Nail is an Alignment Inference tooL☆53Updated 2 weeks ago
- Detect iSNV and construct whole viral genomes from metagenomic samples☆24Updated this week
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Updated 4 years ago
- PaperBLAST: find papers about a protein or its homologs☆46Updated last month
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆29Updated 5 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆49Updated 10 months ago