Real time and remote MCMC trace monitoring with BEASTIARY.
☆21May 10, 2025Updated 9 months ago
Alternatives and similar repositories for beastiary
Users that are interested in beastiary are comparing it to the libraries listed below
Sorting:
- ☆20Jun 15, 2024Updated last year
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆12Sep 26, 2017Updated 8 years ago
- ☆12May 12, 2019Updated 6 years ago
- Quality control for phylogenetic analyses☆13Updated this week
- R Data Exploration for Serratus☆15Mar 29, 2023Updated 2 years ago
- Utilities and distributions for (birth-death) skyline models.☆10Aug 27, 2019Updated 6 years ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Jun 26, 2024Updated last year
- distance based phylogenetic placement☆27Feb 28, 2024Updated 2 years ago
- Scalable relaxed clock phylogenetic dating☆28Sep 3, 2025Updated 6 months ago
- TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).☆14Feb 18, 2025Updated last year
- This is a simple introductory tutorial to help you get started with using BEAST2 and its accomplices.☆11Jul 8, 2025Updated 7 months ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆11May 7, 2018Updated 7 years ago
- ☆11Aug 26, 2024Updated last year
- A phylogeny dating method using least-squares algorithms and criteria☆32Oct 25, 2024Updated last year
- ☆13Jan 23, 2020Updated 6 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆14May 15, 2025Updated 9 months ago
- Real-time species-typing visualisation for nanopore data.☆13Apr 11, 2023Updated 2 years ago
- Browser-based Interactive Phylogeographic Animations☆20Aug 29, 2017Updated 8 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- ☆13Oct 30, 2024Updated last year
- phylogenetic analyses informed by deep mutational scanning data☆15Jun 12, 2024Updated last year
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated last year
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Jan 9, 2019Updated 7 years ago
- R tool to analyse and integrate multiple -omics data☆15Jan 4, 2026Updated 2 months ago
- LinguaPhylo: A language for describing, visualising and simulating probabilistic phylogenetic models☆21Feb 24, 2026Updated last week
- ☆18Jun 11, 2024Updated last year
- serious constellations of reoccurring phylogenetically-independent origin☆39Feb 13, 2026Updated 3 weeks ago
- ☆16Feb 20, 2024Updated 2 years ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆42Feb 23, 2026Updated last week
- The Zika bioinformatics pipeline☆37Mar 29, 2020Updated 5 years ago
- An easy way of MLSTyping your genomes in R.☆19Dec 21, 2020Updated 5 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Jan 13, 2019Updated 7 years ago
- Spread visualizes how viruses and other pathogens are spreading in time and space. It creates compellable shareable, interactive and time…☆20Jan 23, 2025Updated last year
- Racmacs R package for performing antigenic cartography☆24Jun 27, 2024Updated last year
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆17Apr 28, 2023Updated 2 years ago
- Visualize and perform a multitude of operations on newick files☆17Mar 7, 2022Updated 3 years ago
- Official place for proposals and details around monkeypox virus lineage designations☆23Dec 9, 2025Updated 2 months ago
- Bayesian molecular clock dating tutorial with genome-scale datasets☆19Dec 4, 2021Updated 4 years ago
- Programmatically interact with the GISAID database.☆80Aug 5, 2025Updated 7 months ago