Wytamma / beastiary
Real time and remote MCMC trace monitoring with BEASTIARY.
☆20Updated 6 months ago
Alternatives and similar repositories for beastiary:
Users that are interested in beastiary are comparing it to the libraries listed below
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆33Updated this week
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆37Updated 3 months ago
- ☆16Updated this week
- ☆12Updated 5 years ago
- Estimating time trees from very large phylogenies☆26Updated 8 months ago
- Influenza data pipeline to automate genotyping assignment☆29Updated last month
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆33Updated this week
- ☆19Updated 9 months ago
- ☆17Updated 9 months ago
- Scalable relaxed clock phylogenetic dating☆24Updated 11 months ago
- Main development repository for SpreadGL☆18Updated 5 months ago
- Nail is an Alignment Inference tooL☆44Updated last month
- ☆20Updated last month
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆36Updated 2 weeks ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆33Updated 3 years ago
- Reconstruction of transmission trees using genomic data☆61Updated last year
- Nextstrain build for avian influenza viruses☆25Updated this week
- Efficient calculation of phylogenetic distance matrices.☆46Updated 5 months ago
- Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.☆12Updated 3 weeks ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆15Updated 8 months ago
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆29Updated 3 months ago
- Bacterial phylogenetics in BEAST 2.☆17Updated last year
- Inference of putative transmission phylogenetic clusters☆11Updated 4 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆39Updated last week
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆47Updated 2 weeks ago
- Phylogenetic inference using Stan☆24Updated 2 weeks ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆35Updated 2 weeks ago
- Interpretative standards for AMR genotypes☆18Updated 8 months ago