Wytamma / beastiaryLinks
Real time and remote MCMC trace monitoring with BEASTIARY.
☆20Updated 3 weeks ago
Alternatives and similar repositories for beastiary
Users that are interested in beastiary are comparing it to the libraries listed below
Sorting:
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆39Updated 3 weeks ago
- Nextstrain build for avian influenza viruses☆25Updated this week
- A collection of documented examples using TreeTime☆21Updated 5 years ago
- ☆12Updated 6 years ago
- Estimating time trees from very large phylogenies☆26Updated 10 months ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated last month
- ☆19Updated 11 months ago
- Bacterial phylogenetics in BEAST 2.☆17Updated 2 years ago
- Influenza data pipeline to automate genotyping assignment☆33Updated this week
- ☆17Updated 11 months ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆15Updated last month
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆47Updated this week
- ☆16Updated 2 months ago
- Inference of putative transmission phylogenetic clusters☆11Updated 4 years ago
- Efficient calculation of phylogenetic distance matrices.☆47Updated 8 months ago
- Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"☆18Updated last month
- Nail is an Alignment Inference tooL☆48Updated 2 weeks ago
- Scalable relaxed clock phylogenetic dating☆25Updated last year
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆39Updated 6 months ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆62Updated 2 years ago
- Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.☆12Updated 3 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 7 months ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- Efficient and fast querying and parsing of GTDB's data☆28Updated 2 months ago
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆32Updated 6 months ago
- A phylogeny dating method using least-squares algorithms and criteria☆26Updated 7 months ago
- Reconstruction of transmission trees using genomic data☆62Updated last year
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆39Updated this week
- Plot microbiome time series in parallel☆26Updated last year