Alternatives and similar repositories for beastiary:

Users that are interested in beastiary are comparing it to the libraries listed below

• broadinstitute / delphy
  Fast, scalable, accurate and accessible Bayesian phylogenetics
  ☆37Updated last week
• grubaughlab / DENV_pipeline
  ☆16Updated last month
• tothuhien / lsd-0.3beta
  ☆12Updated 5 years ago
• theosanderson / chronumental
  Estimating time trees from very large phylogenies
  ☆26Updated 9 months ago
• flu-crew / TreeSort
  Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.
  ☆13Updated 3 weeks ago
• USDA-VS / GenoFLU
  Influenza data pipeline to automate genotyping assignment
  ☆33Updated 3 months ago
• duchene / phylomad
  ☆19Updated 10 months ago
• flu-crew / parnas
  Phylogenetic maximum representation sampling: choosing most representative strains or taxa
  ☆38Updated 3 weeks ago
• pathoplexus / pathoplexus
  An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.
  ☆35Updated last week
• xavierdidelot / TransPhylo
  Reconstruction of transmission trees using genomic data
  ☆62Updated last year
• TravisWheelerLab / nail
  Nail is an Alignment Inference tooL
  ☆47Updated this week
• noemielefrancq / Phylowave_Learning-fitness-dynamics-pathogens-in-phylogenies
  Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"
  ☆17Updated 2 weeks ago
• neherlab / treetime_examples
  A collection of documented examples using TreeTime
  ☆21Updated 5 years ago
• CDCgov / aquascope
  ☆20Updated last month
• peterk87 / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆26Updated last month
• NicolaDM / MAPLE
  MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.
  ☆47Updated last week
• 4ment / phylostan
  Phylogenetic inference using Stan
  ☆24Updated 2 months ago
• tgvaughan / bacter
  Bacterial phylogenetics in BEAST 2.
  ☆17Updated 2 years ago
• ecbush / xenoGI
  Code for detecting genomic island insertions in clades of microbes.
  ☆19Updated last year
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆24Updated last year
• dhelekal / CaveDive
  ☆17Updated 10 months ago
• chanzuckerberg / galago
  Interpretation aids for genomic epidemiology
  ☆9Updated 6 months ago
• mrc-ide / skygrowth
  Phylodynamic inference
  ☆18Updated 4 years ago
• fmenardo / Treemmer
  Python tool to reduce size and redundancy of phylogenetic datasets
  ☆38Updated last year
• nextstrain / avian-flu
  Nextstrain build for avian influenza viruses
  ☆25Updated last month
• bacpop / mandrake
  Mandrake 🌿/👨‍🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding
  ☆37Updated 2 months ago
• vinisalazar / metaphor
  Metaphor: a general-purpose workflow for assembly and binning of metagenomes
  ☆39Updated 5 months ago
• corneliusroemer / pango_aliasor
  Utility to alias and dealias pango lineages
  ☆22Updated last year
• tothuhien / Rlsd2
  An R-wrapper for lsd2
  ☆9Updated 2 years ago
• alvinxhan / Phydelity
  Inference of putative transmission phylogenetic clusters
  ☆11Updated 4 years ago