snipit: summarise snps relative to your reference sequence
☆178Jan 13, 2026Updated 5 months ago
Alternatives and similar repositories for snipit
Users that are interested in snipit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 7 months ago
- Systematic ProtEin AnnotatoR☆19Sep 20, 2025Updated 9 months ago
- ☆12Feb 15, 2023Updated 3 years ago
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Jun 22, 2022Updated 4 years ago
- Rapid determination of appropriate reference genomes.☆102Jan 22, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆75Jan 23, 2024Updated 2 years ago
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆259May 26, 2026Updated last month
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆77Updated this week
- A tool for exploring large trees in the browser☆133Jun 14, 2026Updated 3 weeks ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆155Oct 2, 2025Updated 9 months ago
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Apr 5, 2022Updated 4 years ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆254Updated this week
- Ultrafast Sample Placement on Existing Trees☆140Jun 1, 2026Updated last month
- REcombination BARcode detector.☆16Apr 2, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 4 years ago
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆115Jun 18, 2026Updated 3 weeks ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆28May 7, 2026Updated 2 months ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆40Feb 20, 2026Updated 4 months ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- Create a tree using Mash distances☆188Oct 24, 2023Updated 2 years ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆109Dec 11, 2023Updated 2 years ago
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated 3 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆38Jan 12, 2026Updated 5 months ago
- Reorients assembled microbial sequences☆141Jun 30, 2026Updated last week
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Dec 2, 2024Updated last year
- An updated pipeline for pangenome investigation☆363Jul 2, 2026Updated last week
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 3 years ago
- Synteny and Rearrangement Identifier☆474Jul 1, 2026Updated last week
- Cluster Investigation & Virus Epidemiology Tool☆50Updated this week
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆151Updated this week
- Software package for assigning SARS-CoV-2 genome sequences to global lineages.☆454Jun 10, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 7 months ago
- Finding regions of similarity between plasmids☆17Updated this week
- ☆18Jun 11, 2024Updated 2 years ago
- Tool to plot synteny and structural rearrangements between genomes☆348Apr 7, 2025Updated last year
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆90Dec 15, 2024Updated last year
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Dec 3, 2024Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆234Apr 27, 2026Updated 2 months ago