aineniamh / snipit
snipit: summarise snps relative to your reference sequence
☆155Updated last month
Alternatives and similar repositories for snipit:
Users that are interested in snipit are comparing it to the libraries listed below
- BSR-Based Allele Calling Algorithm☆140Updated last week
- The ARTIC field bioinformatics pipeline☆120Updated last week
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆139Updated 5 months ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆130Updated last year
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆120Updated this week
- ☆199Updated last month
- "Reads to report" for public health and clinical microbiology☆139Updated last year
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆113Updated 2 weeks ago
- ☆129Updated 9 months ago
- Metagenomic classification of long-read sequencing data☆76Updated this week
- iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.☆119Updated this week
- Convert various sequence formats to FASTA☆132Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆316Updated 9 months ago
- An updated pipeline for pangenome investigation☆288Updated 2 weeks ago
- Scan contig files against PubMLST typing schemes☆218Updated 2 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆197Updated last year
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆91Updated last year
- Assessing the quality of metagenome-derived genome bins using machine learning☆198Updated this week
- a signal-level demultiplexer for Oxford Nanopore reads☆124Updated 4 years ago
- fast phage annotation program☆158Updated 2 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆214Updated this week
- DDBJ Fast Annotation and Submission Tool☆79Updated 3 weeks ago
- Tool to plot synteny and structural rearrangements between genomes☆300Updated last month
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆98Updated last year
- Benchmarking of long-read assembly tools for bacterial whole genomes☆170Updated 4 years ago
- ☆123Updated last month
- Long-read mock community experiments☆104Updated 3 years ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Updated last year
- ARTIC nanopore protocol for nCoV2019 novel coronavirus☆170Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆106Updated this week