aineniamh / snipit
snipit: summarise snps relative to your reference sequence
☆151Updated this week
Alternatives and similar repositories for snipit:
Users that are interested in snipit are comparing it to the libraries listed below
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆134Updated 3 months ago
- The ARTIC field bioinformatics pipeline☆119Updated last week
- BSR-Based Allele Calling Algorithm☆139Updated this week
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆113Updated last week
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆88Updated last year
- iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.☆119Updated 2 weeks ago
- ☆197Updated this week
- Foreign Contamination Screening caller scripts and documentation☆117Updated 2 months ago
- Tool to plot synteny and structural rearrangements between genomes☆294Updated 2 months ago
- geNomad: Identification of mobile genetic elements☆207Updated this week
- Pairwise SNP distance matrix from a FASTA sequence alignment☆128Updated 10 months ago
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆97Updated last year
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆111Updated 3 weeks ago
- An updated pipeline for pangenome investigation☆275Updated 3 months ago
- fast phage annotation program☆152Updated last week
- DDBJ Fast Annotation and Submission Tool☆78Updated last month
- "Reads to report" for public health and clinical microbiology☆137Updated 10 months ago
- ☆165Updated 4 months ago
- Long-read mock community experiments☆103Updated 3 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆192Updated 7 months ago
- Scan contig files against PubMLST typing schemes☆210Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆314Updated 8 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆112Updated 8 months ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Updated last year
- Metagenomic classification of long-read sequencing data☆72Updated last week
- a signal-level demultiplexer for Oxford Nanopore reads☆123Updated 4 years ago
- FunGAP: fungal Genome Annotation Pipeline☆109Updated last year
- ☆127Updated 7 months ago
- a short-read polishing tool for long-read assemblies☆151Updated 7 months ago
- ☆118Updated last week