aineniamh / snipitLinks
snipit: summarise snps relative to your reference sequence
☆162Updated last month
Alternatives and similar repositories for snipit
Users that are interested in snipit are comparing it to the libraries listed below
Sorting:
- A tool for generating consensus long-read assemblies for bacterial genomes☆199Updated 3 weeks ago
- ☆219Updated 9 months ago
- The ARTIC fieldbioinformatics pipeline☆125Updated last month
- ☆148Updated last year
- Ultra-fast preprocessing and quality control for long-read sequencing data☆195Updated 2 months ago
- iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.☆130Updated last week
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆144Updated 2 months ago
- ☆219Updated 2 weeks ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆195Updated 2 months ago
- BSR-Based Allele Calling Algorithm☆148Updated last week
- "Reads to report" for public health and clinical microbiology☆141Updated last year
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆161Updated 7 months ago
- OPERA-MS - Hybrid Metagenomic Assembler☆100Updated last year
- Foreign Contamination Screening caller scripts and documentation☆150Updated 8 months ago
- A fast whole-genome aligner based on de Bruijn graphs☆153Updated 4 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆262Updated last month
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆99Updated 7 months ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- Pan-genome wide association studies☆205Updated last year
- Convert various sequence formats to FASTA☆139Updated 3 years ago
- DDBJ Fast Annotation and Submission Tool☆83Updated 2 months ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆138Updated 2 years ago
- Long-read mock community experiments☆104Updated 4 years ago
- a short-read polishing tool for long-read assemblies☆195Updated 2 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆208Updated last year
- Processing pipeline for pan-genome visulization and exploration☆142Updated 2 years ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆146Updated last month
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆168Updated this week
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Updated 2 years ago