Course materials for the Advanced Courses Working With Pathogen Genomes course run virtually in Asia 10-14 May 2021
☆11Jul 5, 2024Updated 2 years ago
Alternatives and similar repositories for WWPG_2021
Users that are interested in WWPG_2021 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Detecting hand drawn flowcharts using Tensorflow Object Detection API - Faster RCNN☆19Nov 25, 2022Updated 3 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆16Jun 26, 2018Updated 8 years ago
- RSV-A lineage definitions and proposals☆16Nov 9, 2025Updated 9 months ago
- Assembly based core genome SNP alignments for bacteria☆25Oct 23, 2019Updated 6 years ago
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Jupyter notebooks and Python code for analyzing air quality (fine particle, PM2.5)☆45Jun 6, 2026Updated 2 months ago
- ☆41Jan 23, 2025Updated last year
- This repository contains the material (datasets, code, videos, spreadsheets) related to my book Stochastic Processes and Simulations - A …☆54Sep 23, 2022Updated 3 years ago
- ☆11Sep 28, 2017Updated 8 years ago
- Bioinformatics Pipeline and Visualization resources☆65Aug 30, 2024Updated last year
- Data cleaning, pre-processing, and Analytics on a Health care data using Spark and Python.☆48Jul 19, 2023Updated 3 years ago
- serious constellations of reoccurring phylogenetically-independent origin☆39Feb 13, 2026Updated 6 months ago
- ☆15Oct 22, 2024Updated last year
- Collection of scripts for automated SARS-CoV-2 genome surveillance.☆24Sep 19, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 2 months ago
- a python package for automated generation of phylogenetic trees from genbank files☆24Apr 9, 2026Updated 4 months ago
- The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linka…☆14May 23, 2023Updated 3 years ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆33Oct 25, 2013Updated 12 years ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Jul 2, 2026Updated last month
- Find endogenous viral elements in genomes☆24Sep 24, 2025Updated 10 months ago
- Some ideas on things to learn to get started with bioinformatics☆19Dec 5, 2022Updated 3 years ago
- ☆11Mar 10, 2024Updated 2 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆79Dec 5, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆14Jan 6, 2023Updated 3 years ago
- Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis tools☆11Apr 26, 2020Updated 6 years ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆37Apr 24, 2025Updated last year
- Static website for the PH4AGE alliance☆14Oct 27, 2023Updated 2 years ago
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 9 years ago
- Scripts for building the ARTIC lab-on-an-SSD☆11Sep 9, 2020Updated 5 years ago
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- ☆10Apr 16, 2025Updated last year
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆94Jan 14, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆15Aug 26, 2024Updated last year
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆14Jun 30, 2023Updated 3 years ago
- This software implements a high-throughput data processing pipeline to identify and charaterize SARS-CoV-2 variant sequences in specimens…☆11Aug 1, 2023Updated 3 years ago
- A repo to reproduce the experiments in the YACHT manuscript☆12Nov 2, 2023Updated 2 years ago
- Systematic ProtEin AnnotatoR☆19Sep 20, 2025Updated 10 months ago
- MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data☆13Jun 9, 2026Updated 2 months ago
- Generate basic stats for an assembly.☆13Feb 12, 2023Updated 3 years ago