Alternatives and similar repositories for toil

Users that are interested in toil are comparing it to the libraries listed below

• common-workflow-language / common-workflow-language
  Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
  ☆1,476Updated last month
• openwdl / wdl
  Specification for the Workflow Description Language (WDL).
  ☆842Updated this week
• common-workflow-language / cwltool
  Common Workflow Language reference implementation
  ☆361Updated last week
• arvados / arvados
  An open source platform for managing and analyzing biomedical big data
  ☆415Updated this week
• Illumina / pyflow
  A lightweight parallel task engine
  ☆148Updated 5 years ago
• pharmbio / sciluigi
  A light-weight wrapper library around Spotify's Luigi workflow library to make writing scientific workflows more fluent, flexible and mod…
  ☆335Updated last year
• elasticluster / elasticluster
  Create clusters of VMs on the cloud and configure them with Ansible.
  ☆340Updated 2 years ago
• cgat-developers / ruffus
  CGAT-ruffus is a lightweight python module for running computational pipelines
  ☆175Updated 4 years ago
• broadinstitute / cromwell
  Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale product…
  ☆1,050Updated last week
• rabix / composer
  Visual and code editor for Common Workflow Language
  ☆313Updated 3 years ago
• Barski-lab / cwl-airflow
  Python package to extend Airflow functionality with CWL1.1 support
  ☆192Updated 2 years ago
• chanzuckerberg / miniwdl
  Workflow Description Language developer tools & local runner
  ☆200Updated this week
• luispedro / jug
  Parallel programming with Python
  ☆461Updated 6 months ago
• etetoolkit / ete
  Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection …
  ☆865Updated last month
• thieman / dagobah
  Simple DAG-based job scheduler in Python
  ☆766Updated 6 years ago
• ohsu-comp-bio / funnel
  Funnel is a toolkit for distributed task execution via a simple, standard API.
  ☆134Updated this week
• Mizzou-CBMI / COSMOS2
  Python Scientific Pipeline Management System
  ☆71Updated 2 years ago
• selinon / selinon
  An advanced distributed task flow management on top of Celery
  ☆313Updated 10 months ago
• blaze / odo
  Data Migration for the Blaze Project
  ☆1,004Updated 3 years ago
• epsy / clize
  CLIze: Turn Python functions into command-line interfaces
  ☆495Updated 2 years ago
• jtriley / StarCluster
  StarCluster is an open source cluster-computing toolkit for Amazon's Elastic Compute Cloud (EC2).
  ☆583Updated 3 years ago
• DataBiosphere / dsub
  Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.
  ☆275Updated this week
• pygridtools / drmaa-python
  Python wrapper around the C DRMAA library.
  ☆108Updated 6 years ago
• eaton-lab / toytree
  A minimalist tree plotting library using toyplot graphs
  ☆187Updated last month
• pyranges / ncls
  NCLS. Basically a static interval-tree that is silly fast for both construction and lookups. Deprecated but maintained.
  ☆224Updated 7 months ago
• chaimleib / intervaltree
  A mutable, self-balancing interval tree. Queries may be by point, by range overlap, or by range containment.
  ☆681Updated last month
• reubano / meza
  A Python toolkit for processing tabular data
  ☆421Updated 11 months ago
• counsyl / stor
  A cross-compatible CLI and Python API for accessing block and object storage
  ☆35Updated last month
• jamescasbon / PyVCF
  A Variant Call Format reader for Python.
  ☆418Updated 2 years ago
• inveniosoftware-contrib / workflow
  Simple Pythonic Workflows
  ☆156Updated 5 years ago