DataBiosphere / toil
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
β910Updated last week
Alternatives and similar repositories for toil
Users that are interested in toil are comparing it to the libraries listed below
Sorting:
- Repository for the CWL standards. Use https://cwl.discourse.group/ for support πβ1,465Updated 5 months ago
- An open source platform for managing and analyzing biomedical big dataβ404Updated last week
- Common Workflow Language reference implementationβ348Updated last week
- Specification for the Workflow Description Language (WDL).β812Updated 2 weeks ago
- CGAT-ruffus is a lightweight python module for running computational pipelinesβ174Updated 3 years ago
- A lightweight parallel task engineβ147Updated 4 years ago
- Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale productβ¦β1,017Updated this week
- Workflow Description Language developer tools & local runnerβ188Updated 2 weeks ago
- A light-weight wrapper library around Spotify's Luigi workflow library to make writing scientific workflows more fluent, flexible and modβ¦β336Updated 5 months ago
- A DSL for data-driven computational pipelinesβ2,935Updated this week
- Data Migration for the Blaze Projectβ1,003Updated 2 years ago
- Pinball is a scalable workflow managerβ1,043Updated 5 years ago
- Python package to extend Airflow functionality with CWL1.1 supportβ188Updated last year
- Visual and code editor for Common Workflow Languageβ305Updated 2 years ago
- Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection β¦β824Updated last week
- Create clusters of VMs on the cloud and configure them with Ansible.β338Updated last year
- Yet another redundant workflow engineβ544Updated 2 months ago
- A language and runtime for distributed, incremental data processing in the cloudβ966Updated last year
- Bpipe - a tool for running and managing bioinformatics pipelinesβ236Updated 3 months ago
- Simple DAG-based job scheduler in Pythonβ766Updated 5 years ago
- Funnel is a toolkit for distributed task execution via a simple, standard API.β124Updated this week
- Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPsβ321Updated last year
- A curated list of nextflow based pipelinesβ589Updated 2 years ago
- An app store for scientific workflows, tools, notebooks, and servicesβ125Updated this week
- Python wrapper around the C DRMAA library.β108Updated 6 years ago
- Make your user-responsive long-running Celery jobs totally awesomer.β645Updated 2 weeks ago
- Parallel programming with Pythonβ453Updated last week
- Deprecatedβ100Updated 5 years ago
- [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0β74Updated 4 years ago
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysisβ1,005Updated 8 months ago