DataBiosphere / toilLinks
A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).
β924Updated last week
Alternatives and similar repositories for toil
Users that are interested in toil are comparing it to the libraries listed below
Sorting:
- Repository for the CWL standards. Use https://cwl.discourse.group/ for support πβ1,474Updated last year
- Common Workflow Language reference implementationβ358Updated this week
- An open source platform for managing and analyzing biomedical big dataβ412Updated last week
- CGAT-ruffus is a lightweight python module for running computational pipelinesβ175Updated 4 years ago
- Specification for the Workflow Description Language (WDL).β840Updated last month
- A lightweight parallel task engineβ148Updated 5 years ago
- Visual and code editor for Common Workflow Languageβ310Updated 2 years ago
- A light-weight wrapper library around Spotify's Luigi workflow library to make writing scientific workflows more fluent, flexible and modβ¦β335Updated last year
- Python package to extend Airflow functionality with CWL1.1 supportβ192Updated 2 years ago
- Parallel programming with Pythonβ459Updated 4 months ago
- Workflow Description Language developer tools & local runnerβ200Updated last month
- Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection β¦β857Updated 3 weeks ago
- Create clusters of VMs on the cloud and configure them with Ansible.β338Updated 2 years ago
- Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale productβ¦β1,041Updated this week
- Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPsβ325Updated 2 months ago
- Data Migration for the Blaze Projectβ1,004Updated 3 years ago
- Simple DAG-based job scheduler in Pythonβ766Updated 6 years ago
- Python Scientific Pipeline Management Systemβ71Updated 2 years ago
- Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.β275Updated this week
- Funnel is a toolkit for distributed task execution via a simple, standard API.β133Updated this week
- A Variant Call Format reader for Python.β418Updated 2 years ago
- A DSL for data-driven computational pipelinesβ3,225Updated last week
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysisβ1,019Updated last year
- Bravado is a python client library for Swagger 2.0 servicesβ608Updated 3 months ago
- CLIze: Turn Python functions into command-line interfacesβ495Updated 2 years ago
- Python wrapper around the C DRMAA library.β108Updated 6 years ago
- NCLS. Basically a static interval-tree that is silly fast for both construction and lookups. Deprecated but maintained.β224Updated 5 months ago
- Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24β99Updated 7 years ago
- Pinball is a scalable workflow managerβ1,043Updated 6 years ago
- Yet another redundant workflow engineβ566Updated 2 weeks ago