Common Workflow Language reference implementation
β373Jul 19, 2026Updated this week
Alternatives and similar repositories for cwltool
Users that are interested in cwltool are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository for the CWL standards. Use https://cwl.discourse.group/ for support πβ1,481Jan 8, 2026Updated 6 months ago
- Deprecatedβ101Aug 12, 2019Updated 6 years ago
- Python utilities for CWLβ43Updated this week
- Released CWL v1.2.1 specificationβ45Mar 21, 2026Updated 4 months ago
- A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).β936Updated this week
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Import a CWL workflow specification to Nextflow script (experimental)β27Aug 9, 2018Updated 7 years ago
- CWL CommandLineTool descriptions for biology/life-sciences related applicationsβ81Mar 25, 2025Updated last year
- Framework for testing CWL tools and workflowsβ20Updated this week
- A language server for Common Workflow Languageβ64Dec 6, 2023Updated 2 years ago
- Visual and code editor for Common Workflow Languageβ315Jan 11, 2023Updated 3 years ago
- Trigger the Google Genomics Pipeline API with CWLβ11Feb 7, 2017Updated 9 years ago
- A web application to view and share Common Workflow Language workflowsβ50Jul 8, 2026Updated last week
- Python package to extend Airflow functionality with CWL1.1 supportβ194Oct 25, 2023Updated 2 years ago
- [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0β75Nov 18, 2020Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Profile for provenance research object of a CWL workflow runβ19Dec 20, 2022Updated 3 years ago
- [Historical] Reproducible Analyses for Bioinformaticsβ106Mar 11, 2019Updated 7 years ago
- StreamFlow Workflow Managerβ64Updated this week
- Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirementβ29Jun 9, 2020Updated 6 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and clickβ11Jul 29, 2019Updated 6 years ago
- Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale productβ¦β1,074Updated this week
- An open source platform for managing and analyzing biomedical big dataβ420Updated this week
- CWL experimental grammarβ11Nov 16, 2025Updated 8 months ago
- APIs for discovering genomics tools, their metadata and their containersβ35Mar 28, 2026Updated 3 months ago
- GPUs on demand by Runpod - Special Offer Available β’ AdRun AI, ML, and HPC workloads on powerful cloud GPUsβwithout limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflowsβ44Sep 17, 2023Updated 2 years ago
- Implementation of the GA4GH Workflow Execution Service, a REST service for running workflowsβ39Apr 13, 2026Updated 3 months ago
- Docker images of bioinformatics softwareβ21Jun 15, 2017Updated 9 years ago
- Create cwl workflows by writing a simple Python scriptβ39Apr 29, 2020Updated 6 years ago
- cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.β19Mar 2, 2023Updated 3 years ago
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specificβ¦β21Nov 7, 2022Updated 3 years ago
- Visualizer of CWL (Common Workflow Language) workflows for Vueβ30Dec 7, 2022Updated 3 years ago
- Patterns commonly encountered when writing CWL workflowsβ26Mar 30, 2022Updated 4 years ago
- A library for generating an interactive SVG visualization of CWL workflowsβ78Aug 15, 2024Updated last year
- Virtual machines for every use case on DigitalOcean β’ AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Import and run CWL workflows on DNAnexus (alpha)β13Sep 12, 2018Updated 7 years ago
- Accumulating container resource usage with workflow metadataβ19Mar 17, 2021Updated 5 years ago
- Open workflow definitions for genomic analysis from MGI at WUSM.β106Jun 23, 2025Updated last year
- [Experimental] Workflow Definition Language (WDL) to CWLβ28Nov 17, 2021Updated 4 years ago
- Specification for the Workflow Description Language (WDL).β856Updated this week
- Tools for bam file processingβ56Apr 20, 2015Updated 11 years ago
- The CWL v1.0 - v1.2 user guideβ42Jun 18, 2026Updated last month