common-workflow-language / cwltool
Common Workflow Language reference implementation
☆332Updated last week
Related projects: ⓘ
- Workflow Description Language developer tools & local runner☆172Updated last month
- An open source platform for managing and analyzing biomedical big data☆372Updated last week
- Docker Images tracking the stable Galaxy releases.☆225Updated last year
- An app store for scientific workflows, tools, notebooks, and services☆119Updated this week
- Bpipe - a tool for running and managing bioinformatics pipelines☆226Updated 2 weeks ago
- A curated list of nextflow based pipelines☆568Updated last year
- Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training m…☆89Updated 3 weeks ago
- A curated collection of Nextflow implementation patterns☆329Updated 10 months ago
- Nextflow Tower system☆143Updated last year
- CWL CommandLineTool descriptions for biology/life-sciences related applications☆76Updated 2 months ago
- Performant Pythonic GenomicRanges☆436Updated 3 months ago
- Workflow Description Language - Specification and Implementations☆763Updated last month
- FlowCraft: a component-based pipeline composer for omics analysis using Nextflow.☆241Updated 4 years ago
- Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale product…☆988Updated this week
- Interactive web-based genome browser.☆227Updated 5 years ago
- Python package with helper tools for the nf-core community.☆232Updated last week
- ☆81Updated this week
- cython + htslib == fast VCF and BCF processing☆369Updated this week
- Utilities for building and managing bioconda recipes☆96Updated 3 weeks ago
- Fast, flexible and extensible genome browser.☆310Updated 3 months ago
- A Python library for interacting with the Galaxy API☆85Updated last month
- Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations☆634Updated this week
- The WES API is a standard way to run and manage portable workflows.☆82Updated 2 months ago
- Visual and code editor for Common Workflow Language☆301Updated last year
- Extension for Jupyter which integrates igv.js☆154Updated last year
- A Python package for exploring and analysing genetic variation data☆287Updated this week
- Efficient pythonic random access to fasta subsequences☆450Updated last month
- Educational materials for learning WDL☆117Updated 6 months ago
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆300Updated 2 months ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆467Updated this week