common-workflow-language / cwltool
Common Workflow Language reference implementation
☆348Updated last week
Alternatives and similar repositories for cwltool
Users that are interested in cwltool are comparing it to the libraries listed below
Sorting:
- Workflow Description Language developer tools & local runner☆188Updated 2 weeks ago
- The WES API is a standard way to run and manage portable workflows.☆85Updated 7 months ago
- An open source platform for managing and analyzing biomedical big data☆404Updated last week
- An app store for scientific workflows, tools, notebooks, and services☆125Updated this week
- CWL CommandLineTool descriptions for biology/life-sciences related applications☆78Updated last month
- Bpipe - a tool for running and managing bioinformatics pipelines☆236Updated 3 months ago
- Deprecated☆100Updated 5 years ago
- Specification for the Workflow Description Language (WDL).☆812Updated 2 weeks ago
- Python utilities for CWL☆39Updated 2 months ago
- Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale product…☆1,017Updated this week
- Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training m…☆93Updated last week
- A curated list of nextflow based pipelines☆589Updated 2 years ago
- The Refinery Platform is a data management, analysis and visualization system for bioinformatics and computational biology applications. …☆104Updated 2 years ago
- Utilities for building and managing bioconda recipes☆101Updated last week
- Docker Images tracking the stable Galaxy releases.☆233Updated 2 months ago
- Interactive web-based genome browser.☆227Updated 5 years ago
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Updated 6 months ago
- ☆84Updated 2 months ago
- A Python library for interacting with the Galaxy API☆90Updated last week
- Nextflow Tower system☆150Updated 3 months ago
- A curated collection of Nextflow implementation patterns☆356Updated last year
- Python package to extend Airflow functionality with CWL1.1 support☆188Updated last year
- [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0☆74Updated 4 years ago
- GA4GH Variation Representation Python Implementation☆56Updated 2 weeks ago
- Fast, flexible and extensible genome browser.☆323Updated 2 weeks ago
- Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24☆98Updated 7 years ago
- Python Scientific Pipeline Management System☆71Updated last year
- Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊☆1,465Updated 5 months ago
- Python package with helper tools for the nf-core community.☆256Updated this week
- CGAT-ruffus is a lightweight python module for running computational pipelines☆174Updated 3 years ago