Alternatives and similar repositories for cwltool

Users that are interested in cwltool are comparing it to the libraries listed below

• chanzuckerberg / miniwdl
  Workflow Description Language developer tools & local runner
  ☆188Updated last week
• arvados / arvados
  An open source platform for managing and analyzing biomedical big data
  ☆404Updated this week
• bgruening / docker-galaxy
  Docker Images tracking the stable Galaxy releases.
  ☆234Updated 4 months ago
• common-workflow-library / bio-cwl-tools
  CWL CommandLineTool descriptions for biology/life-sciences related applications
  ☆79Updated 3 months ago
• dockstore / dockstore
  An app store for scientific workflows, tools, notebooks, and services
  ☆127Updated this week
• openwdl / wdl
  Specification for the Workflow Description Language (WDL).
  ☆816Updated last week
• galaxyproject / planemo
  Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training m…
  ☆96Updated last week
• common-workflow-language / cwl-utils
  Python utilities for CWL
  ☆39Updated last week
• DataBiosphere / toil
  A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
  ☆913Updated this week
• nextflow-io / patterns
  A curated collection of Nextflow implementation patterns
  ☆363Updated last year
• ssadedin / bpipe
  Bpipe - a tool for running and managing bioinformatics pipelines
  ☆236Updated 3 weeks ago
• bioconda / bioconda-utils
  Utilities for building and managing bioconda recipes
  ☆102Updated this week
• seqeralabs / nf-tower
  Nextflow Tower system
  ☆151Updated 4 months ago
• common-workflow-language / common-workflow-language
  Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
  ☆1,469Updated 6 months ago
• ga4gh / workflow-execution-service-schemas
  The WES API is a standard way to run and manage portable workflows.
  ☆85Updated 8 months ago
• nextflow-io / awesome-nextflow
  A curated list of nextflow based pipelines
  ☆597Updated this week
• Barski-lab / cwl-airflow
  Python package to extend Airflow functionality with CWL1.1 support
  ☆188Updated last year
• rabix / bunny
  [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0
  ☆74Updated 4 years ago
• brentp / cyvcf2
  cython + htslib == fast VCF and BCF processing
  ☆403Updated 9 months ago
• rabix / composer
  Visual and code editor for Common Workflow Language
  ☆305Updated 2 years ago
• galaxyproject / bioblend
  A Python library for interacting with the Galaxy API
  ☆93Updated last week
• ga4gh / task-execution-schemas
  ☆87Updated last month
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆57Updated this week
• higlass / higlass
  Fast, flexible and extensible genome browser.
  ☆326Updated this week
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆87Updated last week
• sgkit-dev / sgkit
  Scalable genetics toolkit
  ☆257Updated 3 weeks ago
• openwdl / learn-wdl
  Educational materials for learning WDL
  ☆126Updated last year
• g2nb / igv-jupyter
  Extension for Jupyter which integrates igv.js
  ☆154Updated 2 years ago
• common-workflow-library / legacy
  Deprecated
  ☆100Updated 5 years ago
• GenomicsDB / GenomicsDB
  High performance data storage for importing, querying and transforming variants.
  ☆98Updated last month