fls-bioinformatics-core / genomicsLinks
Scripts, utilities and programs for genomic bioinformatics.
☆83Updated 2 weeks ago
Alternatives and similar repositories for genomics
Users that are interested in genomics are comparing it to the libraries listed below
Sorting:
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆71Updated 3 years ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆55Updated 5 years ago
- ☆78Updated 11 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆83Updated 7 months ago
- An awk-like VCF parser☆56Updated last year
- small RNA analysis from NGS data☆37Updated 9 months ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆90Updated 4 years ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆141Updated 7 months ago
- High-performance error correction for Illumina resequencing data☆71Updated 9 years ago
- Tools for the analysis of structural variation in genomes☆79Updated last year
- Maximum likelihood demultiplexing☆47Updated 3 months ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- Bayesian genotyper for structural variants☆133Updated 4 years ago
- Workshop materials for shotgun metagenomics☆36Updated 7 years ago
- Coding Genome Reconstruction using Iso-Seq data☆61Updated 3 years ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- Tools for querying and analysis of genomic data☆27Updated 6 months ago
- Python programs for processing GFF3 files☆98Updated last year
- My collection of light bioinformatics analysis pipelines for specific tasks☆74Updated last year
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆94Updated last month
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated last month
- PacBio hybrid error correction through iterative short read consensus☆61Updated 6 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 6 months ago