fls-bioinformatics-core / genomicsLinks
Scripts, utilities and programs for genomic bioinformatics.
☆83Updated last month
Alternatives and similar repositories for genomics
Users that are interested in genomics are comparing it to the libraries listed below
Sorting:
- small RNA analysis from NGS data☆37Updated last year
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆56Updated 5 years ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- ☆78Updated 11 years ago
- My bioinfo toolbox☆50Updated 8 months ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆125Updated 6 months ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated 2 years ago
- An awk-like VCF parser☆56Updated last year
- ☆63Updated 9 years ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆56Updated 5 years ago
- UCSC Nanopore group's software pipeline for reference-based sequence analysis☆55Updated 10 years ago
- Practical, reusable scripts for bioinformatics☆102Updated 6 years ago
- ☆82Updated 6 years ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆145Updated 9 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- ☆95Updated 3 years ago
- Next-Generation Sequencing(NGS) toolkits.☆48Updated 9 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆89Updated 5 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆86Updated 8 years ago
- an empirical Bayesian framework for mutation detection from cancer genome sequencing data☆31Updated 9 years ago
- Platypus Variant Caller☆108Updated last year
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆90Updated last year
- High-performance error correction for Illumina resequencing data☆73Updated 9 years ago
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Updated 6 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆74Updated 3 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Coding Genome Reconstruction using Iso-Seq data☆62Updated 4 years ago
- materials for the RNA-Seq workshop on Trinity and Tuxedo, covering de novo and genome-guided transcript assembly and downstream analysis.☆48Updated 9 years ago