GenomiqueENS / dockerfilesLinks
☆83Updated 3 years ago
Alternatives and similar repositories for dockerfiles
Users that are interested in dockerfiles are comparing it to the libraries listed below
Sorting:
- ☆78Updated 11 years ago
- An awk-like VCF parser☆56Updated last year
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126Updated 6 months ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- Genomic Interactive Visualization Engine☆146Updated 2 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆89Updated last year
- ☆96Updated 3 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆54Updated 8 years ago
- Galaxy RNA workbench☆40Updated 5 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 3 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- BigWig and BAM utilities☆98Updated last year
- ☆63Updated 4 years ago
- NextSeq specific bcl2fastq2 wrapper.☆55Updated 4 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- ☆55Updated 5 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- JHU EN.600.649: Computational Genomics: Applied Comparative Genomics☆58Updated 7 years ago
- Relevant papers for CNV and SV approaches☆94Updated last year