Alternatives and similar repositories for loom:

Users that are interested in loom are comparing it to the libraries listed below

• sjackman / docker-bio
  Docker images of bioinformatics software
  ☆21Updated 7 years ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 5 years ago
• Novartis / yap
  High throughput, pain-free big data pipelines.
  ☆30Updated 7 years ago
• bjpop / rubra
  Infrastructure code to support DNA pipeline
  ☆38Updated 9 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 5 years ago
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆48Updated last year
• blachlylab / mucor
  ☆12Updated 7 years ago
• dnanexus-archive / dx-cwl
  Import and run CWL workflows on DNAnexus (alpha)
  ☆13Updated 6 years ago
• amplab / smash
  Benchmarking toolkit for variant calling
  ☆47Updated 4 years ago
• arq5x / piledriver
  Basic, no assumptions, multi-pileup
  ☆24Updated 10 years ago
• bmeg / funnel-client
  Trigger the Google Genomics Pipeline API with CWL
  ☆11Updated 7 years ago
• raphael-group / magi
  A web application from the Raphael Lab for mutation annotation and genome interpretation.
  ☆20Updated 6 years ago
• percyfal / snakemakelib
  Snakemake library for bioinformatics programs, with a focus on next-generation sequencing
  ☆22Updated 8 years ago
• bcbio / bcbio.variation.recall
  Parallel merging, squaring off and ensemble calling for genomic variants
  ☆20Updated 5 years ago
• common-workflow-lab / wdl2cwl
  [Experimental] Workflow Definition Language (WDL) to CWL
  ☆28Updated 3 years ago
• michaelbarton / bioinformatics-career-survey
  Survey of bioinformatics field
  ☆26Updated 12 years ago
• broadinstitute / wdl-runner
  Easily run WDL workflows on GCP
  ☆13Updated 3 years ago
• arq5x / cyvcf
  A fast Python library for VCF files leveraging Cython for speed.
  ☆52Updated 6 years ago
• karel-brinda / rnftools
  RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.
  ☆14Updated 6 years ago
• brentp / geneimpacts
  prioritize effects of variant annotations from VEP, SnpEff, et al.
  ☆33Updated last month
• karel-brinda / smbl
  SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.
  ☆23Updated 7 years ago
• johandahlberg / piper
  A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…
  ☆21Updated 8 years ago
• mfiers / Moa
  Lightweight workflows in bioinformatics:
  ☆24Updated 10 years ago
• clintval / genome-browser
  A lightweight Python graphing API for genomic features
  ☆15Updated 2 years ago
• nilesh-tawari / ChronQC
  Manuscript describing ChronQC is now available online in Bioinformatics
  ☆18Updated 5 years ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆32Updated last year
• xguse / blacktie
  Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline
  ☆26Updated 9 years ago
• metalhelix / pipette
  variant discovery and annotation using GATK and Ensembl
  ☆17Updated 11 years ago
• iobio / iobio.viz
  Visualization and charting JS library for streaming genomic data
  ☆19Updated last month
• shenlab-sinai / region_analysis
  A python script used to annotate genomic intervals.
  ☆18Updated 4 years ago