StanfordBioinformatics / loomLinks
A tool for running bioinformatics workflows locally or in the cloud.
☆30Updated 5 years ago
Alternatives and similar repositories for loom
Users that are interested in loom are comparing it to the libraries listed below
Sorting:
- High throughput, pain-free big data pipelines.☆30Updated 8 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 8 years ago
- Docker images of bioinformatics software☆21Updated 8 years ago
- WDL plugin for pytest☆48Updated 2 years ago
- Genomics Research Container Architecture☆48Updated 6 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- Infrastructure code to support DNA pipeline☆38Updated 10 years ago
- Lightweight workflows in bioinformatics:☆24Updated 11 years ago
- X things you should take into consideration if you code for big data analysis☆23Updated 7 years ago
- A workflow assembler for cancer genome analytics and informatics☆19Updated 9 years ago
- FAstqc DAta PArser - A minimal parser to parse FastQC output data.☆16Updated 9 years ago
- Butler is a framework for running scientific workflows on public and academic clouds.☆69Updated 5 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 6 years ago
- [Historical] Reproducible Analyses for Bioinformatics☆106Updated 6 years ago
- Benchmarking toolkit for variant calling☆48Updated 5 years ago
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Updated last year
- A library for next generation genomics in Python 3☆18Updated 7 years ago
- Examples for the Google Genomics Pipelines API.☆50Updated 7 years ago
- A Python library to work with high-throughput sequencing data in the context of data integration☆14Updated 8 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated 2 years ago
- Basic, no assumptions, multi-pileup☆24Updated 11 years ago
- ☆28Updated 7 years ago
- Provides access to complex Bioinformatics software (even BioLinux!) in just one command.☆76Updated 8 years ago
- Finding a scalable alternative to the VCF File for genomics analysis☆14Updated 8 years ago
- a simple read-only sequence database, designed for short reads☆66Updated last year
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Updated 4 years ago
- Quality control methods for human genomic variants.☆62Updated 3 years ago
- Railroadtracks is a Python package to handle connected computation steps for DNA and RNA Seq.☆14Updated 10 years ago
- A command line tool that uses a Boolean calculus of calendars for computing availability (currently supports Google Calendar API)☆25Updated 4 years ago