StanfordBioinformatics / loom
A tool for running bioinformatics workflows locally or in the cloud.
☆29Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for loom
- Docker images of bioinformatics software☆21Updated 7 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 7 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 5 years ago
- Survey of bioinformatics field☆26Updated 12 years ago
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 4 years ago
- python stuff I use☆19Updated 4 years ago
- Infrastructure code to support DNA pipeline☆38Updated 9 years ago
- reference free variant assembly☆32Updated last year
- High throughput, pain-free big data pipelines.☆30Updated 7 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- WDL plugin for pytest☆48Updated last year
- Python-based UCSC genome browser snapshot-taker and gallery-maker☆12Updated 6 months ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Updated 8 years ago
- FAstqc DAta PArser - A minimal parser to parse FastQC output data.☆16Updated 8 years ago
- A lightweight Python graphing API for genomic features☆15Updated 2 years ago
- ☆12Updated 7 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Updated 3 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 7 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Basic, no assumptions, multi-pileup☆24Updated 10 years ago
- Lightweight workflows in bioinformatics:☆23Updated 10 years ago
- What's The Function of these genes?☆23Updated 7 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 8 months ago
- Easily run WDL workflows on GCP☆13Updated 3 years ago
- Library of snakemake rules.☆12Updated 6 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆17Updated 5 years ago
- A workflow assembler for cancer genome analytics and informatics☆19Updated 8 years ago