StanfordBioinformatics / loomLinks
A tool for running bioinformatics workflows locally or in the cloud.
☆30Updated 5 years ago
Alternatives and similar repositories for loom
Users that are interested in loom are comparing it to the libraries listed below
Sorting:
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 8 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- Docker images of bioinformatics software☆21Updated 8 years ago
- High throughput, pain-free big data pipelines.☆30Updated 8 years ago
- WDL plugin for pytest☆48Updated 2 years ago
- A library for next generation genomics in Python 3☆18Updated 7 years ago
- Integrative visualization of multiple omic datasets onto KEGG pathways.☆11Updated 3 years ago
- [Historical] Reproducible Analyses for Bioinformatics☆106Updated 6 years ago
- X things you should take into consideration if you code for big data analysis☆23Updated 7 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 7 years ago
- ☆28Updated 6 years ago
- Genomics Research Container Architecture☆48Updated 6 years ago
- Benchmarking toolkit for variant calling☆48Updated 4 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- A collection of well-known bioinformatics programs.☆25Updated 10 years ago
- Biological Graphic tool in Python☆34Updated 5 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Updated 6 years ago
- Lightweight workflows in bioinformatics:☆24Updated 10 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 6 years ago
- Efficient handling of FASTQ files from Python☆51Updated last month
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 9 months ago
- robust matching of small variant datasets using flexible scoring schemes☆11Updated 5 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Updated 3 years ago
- Python client for GA4GH htsget protocol☆15Updated 2 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- ☆12Updated 8 years ago
- Snakemake skeleton - Build workflows with Snakemake☆19Updated last year
- What's The Function of these genes?☆22Updated 8 years ago
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Updated 10 months ago