Alternatives and similar repositories for loom

Users that are interested in loom are comparing it to the libraries listed below

• Novartis / yap
  High throughput, pain-free big data pipelines.
  ☆30Updated 8 years ago
• sjackman / docker-bio
  Docker images of bioinformatics software
  ☆21Updated 8 years ago
• bmeg / funnel-client
  Trigger the Google Genomics Pipeline API with CWL
  ☆11Updated 8 years ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 6 years ago
• bgruening / coding_for_big_data
  X things you should take into consideration if you code for big data analysis
  ☆23Updated 7 years ago
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆48Updated 2 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 5 years ago
• inutano / docker-ngs-tools
  A catalogue of docker images for NGS data analysis tools
  ☆9Updated 6 years ago
• ChillarAnand / fadapa
  FAstqc DAta PArser - A minimal parser to parse FastQC output data.
  ☆16Updated 9 years ago
• tiagoantao / pygenomics
  A library for next generation genomics in Python 3
  ☆18Updated 7 years ago
• rabix / rabix
  [Historical] Reproducible Analyses for Bioinformatics
  ☆106Updated 6 years ago
• bjpop / rubra
  Infrastructure code to support DNA pipeline
  ☆38Updated 10 years ago
• bcgsc / orca
  Genomics Research Container Architecture
  ☆48Updated 5 years ago
• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated last year
• bcbio / bcbio.variation.recall
  Parallel merging, squaring off and ensemble calling for genomic variants
  ☆20Updated 5 years ago
• karel-brinda / smbl
  SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.
  ☆23Updated 7 years ago
• homologus / Pandoras-Toolbox-for-Bioinformatics
  A collection of well-known bioinformatics programs.
  ☆25Updated 10 years ago
• amplab / smash
  Benchmarking toolkit for variant calling
  ☆47Updated 4 years ago
• clintval / genome-browser
  A lightweight Python graphing API for genomic features
  ☆15Updated 3 years ago
• dnanexus-archive / dx-cwl
  Import and run CWL workflows on DNAnexus (alpha)
  ☆13Updated 6 years ago
• brentp / geneimpacts
  prioritize effects of variant annotations from VEP, SnpEff, et al.
  ☆34Updated 7 months ago
• johanneskoester / alpaca
  ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…
  ☆23Updated 8 months ago
• medvedevgroup / varmatch
  robust matching of small variant datasets using flexible scoring schemes
  ☆11Updated 5 years ago
• jtaghiyar / kronos
  A workflow assembler for cancer genome analytics and informatics
  ☆19Updated 8 years ago
• brentp / python-giggle
  python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.
  ☆16Updated 7 years ago
• shenlab-sinai / region_analysis
  A python script used to annotate genomic intervals.
  ☆18Updated 5 years ago
• fikipollo / paintomics3
  Integrative visualization of multiple omic datasets onto KEGG pathways.
  ☆11Updated 3 years ago
• boutroslab / cld
  A software for the multispecies design of CRISPR/Cas9 libraries
  ☆36Updated 2 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆29Updated last year
• common-workflow-lab / wdl2cwl
  [Experimental] Workflow Definition Language (WDL) to CWL
  ☆28Updated 3 years ago