bow / crimsonLinks
Bioinformatics tool outputs converter to JSON or YAML
☆36Updated last month
Alternatives and similar repositories for crimson
Users that are interested in crimson are comparing it to the libraries listed below
Sorting:
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆122Updated 3 months ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Browser based application for viewing bam alignments☆56Updated 8 years ago
- conda recipes for genomic data☆85Updated 4 years ago
- An awk-like VCF parser☆56Updated last year
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆52Updated 7 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆31Updated last year
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆48Updated 4 years ago
- High-performance error correction for Illumina resequencing data☆72Updated 9 years ago
- BigWig and BAM utilities☆97Updated last year
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆28Updated last month
- Maximum likelihood demultiplexing☆47Updated 5 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- A 3'-end adapter contaminant trimmer☆95Updated 7 years ago
- Thousand Variant Callers Project Repository☆74Updated 5 years ago
- A C library for handling bigWig files☆81Updated 6 months ago
- List of IARC bioinformatics pipelines and resources☆51Updated 3 weeks ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- ☆82Updated 3 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆66Updated 10 years ago
- A read extraction and realignment tool for next generation sequencing data☆101Updated 2 years ago
- ☆95Updated 2 years ago
- Reference genome resource manager☆75Updated last year
- Galaxy RNA workbench☆40Updated 4 years ago
- a pileup library that embraces the huge☆43Updated 4 years ago
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago