bow / crimsonLinks
Bioinformatics tool outputs converter to JSON or YAML
☆35Updated 3 months ago
Alternatives and similar repositories for crimson
Users that are interested in crimson are comparing it to the libraries listed below
Sorting:
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- An awk-like VCF parser☆56Updated last year
- Browser based application for viewing bam alignments☆56Updated 8 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆122Updated 4 months ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- ☆95Updated 2 years ago
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆28Updated 2 months ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49Updated 4 years ago
- SV detection from paired end reads mapping☆38Updated 15 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- High-performance error correction for Illumina resequencing data☆73Updated 9 years ago
- Thousand Variant Callers Project Repository☆73Updated 5 years ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 2 years ago
- A C library for handling bigWig files☆81Updated 7 months ago
- ☆78Updated 11 years ago
- Tools for bam file processing☆55Updated 10 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- a pileup library that embraces the huge☆43Updated 4 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Maximum likelihood demultiplexing☆47Updated 7 months ago
- ☆82Updated 3 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆35Updated 8 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 8 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago