Alternatives and similar repositories for qsubsec

Users that are interested in qsubsec are comparing it to the libraries listed below

• SciLifeLab / NGI-MethylSeq
  This pipeline has moved! Please see:
  ☆11Updated 7 years ago
• sjackman / docker-bio
  Docker images of bioinformatics software
  ☆21Updated 8 years ago
• csiro-crop-informatics / biokanga
  An integrated high performance bioinformatics toolkit
  ☆23Updated 6 years ago
• indraniel / fqgrep
  An approximate sequence pattern matcher for FASTQ/FASTA files.
  ☆31Updated 9 years ago
• karel-brinda / rnftools
  RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.
  ☆14Updated 6 years ago
• bjpop / rubra
  Infrastructure code to support DNA pipeline
  ☆38Updated 10 years ago
• bioboxes / rfc
  Request for comments on interchangeable bioinformatics containers
  ☆39Updated 6 years ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆34Updated 2 years ago
• mdshw5 / strandex
  Sample an approximate number of reads from a fastq file without reading the entire file
  ☆11Updated 8 years ago
• poreathon / poreathon
  Pipeline for poreathon
  ☆14Updated 10 years ago
• incertae-sedis / smof
  Explore and analyze biological sequence data
  ☆17Updated last year
• Abdo-Lab / Tychus
  ☆10Updated 7 years ago
• yvdriess / precipes
  Parallel Recipes : parallel workflow execution made easy
  ☆13Updated 10 years ago
• mariokostelac / ra-integrate
  DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)
  ☆18Updated 9 years ago
• bgruening / coding_for_big_data
  X things you should take into consideration if you code for big data analysis
  ☆23Updated 7 years ago
• koelling / dnacol
  Color DNA/RNA bases in terminal output
  ☆21Updated 8 years ago
• mfiers / Moa
  Lightweight workflows in bioinformatics:
  ☆24Updated 11 years ago
• StanfordBioinformatics / loom
  A tool for running bioinformatics workflows locally or in the cloud.
  ☆30Updated 5 years ago
• NCBI-Hackathons / Master_gff3_parser
  Convert sequence IDs between ucsc/refseq/genbank
  ☆16Updated 7 years ago
• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆46Updated 6 years ago
• jtaghiyar / kronos
  A workflow assembler for cancer genome analytics and informatics
  ☆19Updated 8 years ago
• ChillarAnand / fadapa
  FAstqc DAta PArser - A minimal parser to parse FastQC output data.
  ☆16Updated 9 years ago
• tlawrence3 / FAST
  FAST: Fast Analysis of Sequences Toolbox
  ☆31Updated 6 years ago
• HullUni-bioinformatics / ReproPhylo
  Reproducible Phylogenomics
  ☆22Updated 9 years ago
• sanger-pathogens / companion
  This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion
  ☆21Updated 4 years ago
• nickloman / poredb
  ☆18Updated 8 years ago
• DecodeGenetics / BamHash
  ☆36Updated 5 years ago
• karel-brinda / smbl
  SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.
  ☆23Updated 8 years ago
• enasequence / cramtools
  CRAM format specification and java API for read data.
  ☆60Updated 7 years ago
• gregorykucherov / spaced-seeds-for-metagenomics
  ☆13Updated 9 years ago