bioboxes / rfcLinks
Request for comments on interchangeable bioinformatics containers
☆39Updated 6 years ago
Alternatives and similar repositories for rfc
Users that are interested in rfc are comparing it to the libraries listed below
Sorting:
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆28Updated 3 weeks ago
- Bioinformatics tool outputs converter to JSON or YAML☆35Updated 5 months ago
- ☆43Updated 9 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 11 months ago
- conda recipes for genomic data☆84Updated 4 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Updated 8 years ago
- A collection of well-known bioinformatics programs.☆25Updated 10 years ago
- Pipeline for poreathon☆14Updated 10 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 4 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 7 years ago
- Galaxy Github repository BETA 1. May be destroyed and recreated if post-conversion problems are found (but post-conversion commits on thi…☆12Updated 10 years ago
- ☆36Updated 5 years ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Updated 9 years ago
- Docker images of bioinformatics software☆21Updated 8 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 11 months ago
- SV detection from paired end reads mapping☆38Updated 15 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 8 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- Convert CWL to WDL☆17Updated 9 years ago
- CRAM format specification and java API for read data.☆59Updated 7 years ago
- X things you should take into consideration if you code for big data analysis☆23Updated 7 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Ebola virus surveillance☆15Updated 9 years ago