bioboxes / rfc
Request for comments on interchangeable bioinformatics containers
☆40Updated 5 years ago
Alternatives and similar repositories for rfc:
Users that are interested in rfc are comparing it to the libraries listed below
- ☆43Updated 8 years ago
- A collection of well-known bioinformatics programs.☆25Updated 9 years ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Updated 7 years ago
- Variant caller GUI + genetic disease analysis☆22Updated 4 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 3 months ago
- Tools for bam file processing☆55Updated 9 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆27Updated this week
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Pipeline for poreathon☆14Updated 10 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Ebola virus surveillance☆16Updated 8 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- SV detection from paired end reads mapping☆38Updated 14 years ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- a pileup library that embraces the huge☆42Updated 4 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 8 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- ☆37Updated 4 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆34Updated 8 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- DEPRECIATED! Please use nf-core/tools instead☆19Updated 6 years ago
- Mapping-free variant caller for short-read Illumina data☆19Updated 5 years ago
- Analysis from kallisto paper☆32Updated 9 years ago