bcbio / bcbio-nextgen-vm
Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines
☆65Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for bcbio-nextgen-vm
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 8 years ago
- The Genome Modeling System installer☆78Updated 9 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 5 months ago
- The gkno launcher for executing tools or pipelines☆32Updated 7 years ago
- Request for comments on interchangeable bioinformatics containers☆40Updated 5 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆32Updated 7 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 5 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆80Updated last month
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Variant caller GUI + genetic disease analysis☆22Updated 4 years ago
- Analysis from kallisto paper☆32Updated 8 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- A tool to benchmark mappers and different parameters within minutes☆43Updated 5 years ago
- an empirical Bayesian framework for mutation detection from cancer genome sequencing data☆31Updated 8 years ago
- Tools for bam file processing☆55Updated 9 years ago
- An awk-like VCF parser☆54Updated 10 months ago
- Fork of https://code.google.com/p/ngs-analysis☆18Updated 11 years ago
- ☆21Updated 4 years ago
- variant discovery and annotation using GATK and Ensembl☆17Updated 11 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 6 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated last year
- A false-positive filter for variants called from massively parallel sequencing☆29Updated 7 years ago
- ☆16Updated 7 years ago
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆96Updated 5 years ago
- Scripts, utilities and programs for genomic bioinformatics.☆81Updated 9 months ago
- CRAM format specification and java API for read data.☆58Updated 6 years ago
- ☆61Updated 8 years ago