Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines
☆68Jun 3, 2020Updated 6 years ago
Alternatives and similar repositories for bcbio-nextgen-vm
Users that are interested in bcbio-nextgen-vm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50May 8, 2026Updated 2 months ago
- CloudBioLinux: configure virtual (or real) machines with tools for biological analyses☆257Dec 19, 2023Updated 2 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Aug 24, 2016Updated 9 years ago
- Deprecated☆101Aug 12, 2019Updated 6 years ago
- a string to graph aligner☆41Jul 5, 2016Updated 10 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Homebrew repository for CloudBioLinux: incubator for formulas to end up in homebrew-science☆19Oct 17, 2016Updated 9 years ago
- RNA mapping pipeline☆19Jun 3, 2018Updated 8 years ago
- a lightweight db framework for exploring genetic variation.☆329Apr 28, 2020Updated 6 years ago
- NExt generation Analysis Toolbox☆14Oct 18, 2015Updated 10 years ago
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- BioDSL (pronounced Biodiesel) is a Domain Specific Language for creating bioinformatic analysis workflows.☆16Jul 30, 2018Updated 7 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆95Sep 4, 2019Updated 6 years ago
- Tools for bam file processing☆56Apr 20, 2015Updated 11 years ago
- R package for bcbio RNA-seq analysis.☆64Sep 9, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Genome data visualizations☆226Jan 10, 2026Updated 6 months ago
- ☆36Aug 13, 2020Updated 5 years ago
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,030Aug 24, 2024Updated last year
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Feb 12, 2022Updated 4 years ago
- [Historical] Reproducible Analyses for Bioinformatics☆106Mar 11, 2019Updated 7 years ago
- Genetic changes we can believe in: a web based tool for variant visualization and analysis☆18Apr 17, 2013Updated 13 years ago
- NGS Language Bindings☆123Dec 6, 2023Updated 2 years ago
- Simplify snpEff annotations for interesting cases☆22Feb 18, 2019Updated 7 years ago
- Request for comments on interchangeable bioinformatics containers☆39Jun 18, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Homebrew/science is deprecated☆11Jan 2, 2018Updated 8 years ago
- Parallel Recipes : parallel workflow execution made easy☆13Sep 1, 2015Updated 10 years ago
- significance testing over interval overlaps☆30Jul 11, 2020Updated 6 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Jul 7, 2017Updated 9 years ago
- Variant caller GUI + genetic disease analysis☆22Apr 29, 2020Updated 6 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- create a gemini-compatible database from a VCF☆55Jan 5, 2021Updated 5 years ago
- Blue Collar Bioinformatics website☆10Apr 30, 2024Updated 2 years ago
- a wee tool for random access into BGZF files.☆86May 10, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- https://bam.iobio.io☆47Jun 15, 2026Updated last month
- Provides access to complex Bioinformatics software (even BioLinux!) in just one command.☆75Jun 28, 2017Updated 9 years ago
- chitin: an awful shell for awful bioinformaticians☆61Mar 25, 2020Updated 6 years ago
- The gkno launcher for executing tools or pipelines☆31Jan 17, 2017Updated 9 years ago
- Tools for early stage alignment file processing☆96Mar 12, 2019Updated 7 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Mar 4, 2019Updated 7 years ago
- Stupid Simple Structural Variant View☆25Nov 21, 2016Updated 9 years ago