googlegenomics / dockerflowLinks
Dockerflow is a workflow runner that uses Dataflow to run a series of tasks in Docker with the Pipelines API
☆99Updated 7 years ago
Alternatives and similar repositories for dockerflow
Users that are interested in dockerflow are comparing it to the libraries listed below
Sorting:
- BigDataScript: Scirpting language for big data☆92Updated 4 years ago
- Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.☆276Updated 2 weeks ago
- Advanced BigQuery examples on genomic data.☆88Updated 8 years ago
- Python package to extend Airflow functionality with CWL1.1 support☆190Updated last year
- Google Cloud Dataflow pipelines such as Identity-By-State as well as useful utility classes.☆37Updated 2 years ago
- GCP Variant Transforms☆141Updated 2 months ago
- This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster☆17Updated 7 years ago
- Integrate the GA4GH schemas and probably a scala impl of the service.☆14Updated 9 years ago
- Visual and code editor for Common Workflow Language☆308Updated 2 years ago
- Heterogeneity-incorporating Workflow ApplicationMaster for YARN☆26Updated 7 years ago
- A scalable genome browser. Apache 2 licensed.☆125Updated 2 years ago
- An open source platform for managing and analyzing biomedical big data☆408Updated last week
- Example Cloud Datalab iPython Notebooks for genomics use cases.☆25Updated 8 years ago
- Package to extend Airflow functionality with CWL v1.0 support☆12Updated 6 years ago
- A Variant Caller, Distributed. Apache 2 licensed.☆71Updated 6 years ago
- python parallel map on kubernetes☆34Updated 8 years ago
- Secure Cloud Object REsource: file transfer microservice☆18Updated last week
- Deprecated☆100Updated 6 years ago
- Ready-to-go Parquet-formatted public 'omics datasets☆30Updated 9 years ago
- An implementation of Nextflow.io with Language Workbench Technology. The project helps create computational pipelines that run with the N…☆22Updated 9 years ago
- An app store for scientific workflows, tools, notebooks, and services☆131Updated last week
- VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information☆33Updated 7 years ago
- Examples of using CloudML with genomic data.☆18Updated 6 years ago
- MaRe leverages the power of Docker and Spark to run and scale your serial tools in MapReduce fashion.☆14Updated 3 years ago
- ☆91Updated 2 weeks ago
- Google Container Engine, JupyterHub, and Jupyter for classroom scenarios☆59Updated 7 years ago
- Spark-based variant calling, with experimental support for multi-sample somatic calling (including RNA) and local assembly☆85Updated 7 years ago
- An example of bioinformatics and bigdata tools can playing nicely together☆14Updated 9 years ago
- workflow and resource management system for bioinformatics data analysis☆69Updated 4 years ago
- Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.☆40Updated 7 months ago