Alternatives and similar repositories for dockerflow

Users that are interested in dockerflow are comparing it to the libraries listed below

• googlegenomics / bigquery-examples
  Advanced BigQuery examples on genomic data.
  ☆88Updated 8 years ago
• pcingola / BigDataScript
  BigDataScript: Scirpting language for big data
  ☆92Updated 4 years ago
• googlegenomics / dataflow-java
  Google Cloud Dataflow pipelines such as Identity-By-State as well as useful utility classes.
  ☆37Updated 2 years ago
• marcbux / Hi-WAY
  Heterogeneity-incorporating Workflow ApplicationMaster for YARN
  ☆26Updated 8 years ago
• common-workflow-library / legacy
  Deprecated
  ☆100Updated 6 years ago
• GoogleCloudPlatform / gke-jupyter-classroom
  Google Container Engine, JupyterHub, and Jupyter for classroom scenarios
  ☆59Updated 8 years ago
• DataBiosphere / dsub
  Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.
  ☆275Updated last week
• MG-RAST / AWE
  workflow and resource management system for bioinformatics data analysis
  ☆69Updated 5 years ago
• verilylifesciences / variant-qc
  Quality control methods for human genomic variants.
  ☆62Updated 3 years ago
• Barski-lab / cwl-airflow
  Python package to extend Airflow functionality with CWL1.1 support
  ☆192Updated 2 years ago
• galaxyproject / cloudlaunch
  Easily launch cloud applications.
  ☆42Updated last year
• mcapuccini / TheSparkBox
  TheSparkBox is an all-in-one Spark deployment that you can use to fire up a local cluster.
  ☆12Updated 7 years ago
• med-at-scale / high-health
  Integrate the GA4GH schemas and probably a scala impl of the service.
  ☆14Updated 9 years ago
• googlegenomics / datalab-examples
  Example Cloud Datalab iPython Notebooks for genomics use cases.
  ☆25Updated 8 years ago
• googlegenomics / gcp-variant-transforms
  GCP Variant Transforms
  ☆141Updated 5 months ago
• rabix / composer
  Visual and code editor for Common Workflow Language
  ☆310Updated 2 years ago
• bigdatagenomics / eggo
  Ready-to-go Parquet-formatted public 'omics datasets
  ☆30Updated 10 years ago
• Intel-HLS / TileDB
  TileDB
  ☆79Updated 2 years ago
• dockstore / dockstore
  An app store for scientific workflows, tools, notebooks, and services
  ☆130Updated this week
• BauerLab / VariantSpark
  VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information
  ☆33Updated 8 years ago
• common-workflow-language / cwlviewer
  A web application to view and share Common Workflow Language workflows
  ☆47Updated 2 weeks ago
• mcapuccini / MaRe
  MaRe leverages the power of Docker and Spark to run and scale your serial tools in MapReduce fashion.
  ☆14Updated 3 years ago
• opencb / hpg-bigdata
  This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster
  ☆17Updated 7 years ago
• bigdatagenomics / avocado
  A Variant Caller, Distributed. Apache 2 licensed.
  ☆71Updated 6 years ago
• bigdatagenomics / mango
  A scalable genome browser. Apache 2 licensed.
  ☆126Updated 3 years ago
• googlegenomics / cloudml-examples
  Examples of using CloudML with genomic data.
  ☆18Updated 6 years ago
• DataBiosphere / job-manager
  Job Manager API and UI for interacting with asynchronous batch jobs and workflows.
  ☆27Updated 4 months ago
• dask / knit
  Deprecated, please use https://github.com/jcrist/skein or https://github.com/dask/dask-yarn instead
  ☆53Updated 7 years ago
• allenday / spark-genome-alignment-demo
  An example of bioinformatics and bigdata tools can playing nicely together
  ☆14Updated 9 years ago
• common-workflow-lab / python-cwlgen
  Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement
  ☆29Updated 5 years ago