Dockerflow is a workflow runner that uses Dataflow to run a series of tasks in Docker with the Pipelines API
☆101Nov 21, 2017Updated 8 years ago
Alternatives and similar repositories for dockerflow
Users that are interested in dockerflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- Deprecated☆101Aug 12, 2019Updated 6 years ago
- Examples for the Google Genomics Pipelines API.☆50Dec 15, 2017Updated 8 years ago
- a simple lightweight workflow engine for data analysis scripting☆11Sep 5, 2019Updated 6 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 2 years ago
- [Historical] Reproducible Analyses for Bioinformatics☆106Mar 11, 2019Updated 7 years ago
- ☆10Aug 28, 2025Updated 6 months ago
- An implementation of Nextflow.io with Language Workbench Technology. The project helps create computational pipelines that run with the N…☆22Aug 9, 2016Updated 9 years ago
- TheSparkBox is an all-in-one Spark deployment that you can use to fire up a local cluster.☆12Jun 26, 2018Updated 7 years ago
- Convert CWL to WDL☆17Oct 17, 2016Updated 9 years ago
- Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows☆39Mar 10, 2026Updated last week
- Import a CWL workflow specification to Nextflow script (experimental)☆27Aug 9, 2018Updated 7 years ago
- A fast, parallel, streaming multipart uploader for S3☆14Mar 23, 2017Updated 8 years ago
- ☆11Jun 23, 2017Updated 8 years ago
- APIs for discovering genomics tools, their metadata and their containers☆34Feb 26, 2026Updated 3 weeks ago
- Image and VM management for Jenkins, Spark and Mesos clusters in EC2☆22Jul 24, 2020Updated 5 years ago
- Open-source opinionated Galaxy-based framework for microbiota analysis☆14Jan 21, 2021Updated 5 years ago
- Request for comments on interchangeable bioinformatics containers☆39Jun 18, 2019Updated 6 years ago
- An ontology of imaging and related techniques and technologies, image processing and analysis, image data and formats, within bio- and ot…☆12Oct 26, 2025Updated 4 months ago
- An app store for scientific workflows, tools, notebooks, and services☆131Mar 9, 2026Updated 2 weeks ago
- A collection of well-known bioinformatics programs.☆25Apr 24, 2015Updated 10 years ago
- workflow and resource management system for bioinformatics data analysis☆70Oct 29, 2020Updated 5 years ago
- Parallel Recipes : parallel workflow execution made easy☆13Sep 1, 2015Updated 10 years ago
- ☆13Jun 22, 2017Updated 8 years ago
- Python bindings for WDL☆10Nov 9, 2017Updated 8 years ago
- RNA mapping pipeline☆18Jun 3, 2018Updated 7 years ago
- Original materials for the "Introduction to Solving Biological Problems with Python" 2 days course☆10Jun 25, 2018Updated 7 years ago
- ☆31Mar 1, 2026Updated 3 weeks ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Jul 26, 2017Updated 8 years ago
- Workflows made easy.☆12Mar 23, 2018Updated 8 years ago
- Butler is a framework for running scientific workflows on public and academic clouds.☆70Feb 10, 2020Updated 6 years ago
- Minimal docker image for bwa. Not developed any more.☆11Apr 26, 2015Updated 10 years ago
- An external library for delivering Slurm Elastic Computing.☆12Mar 31, 2017Updated 8 years ago
- SAGA-based Pilot-Job Implementation for Compute and Data☆19Mar 14, 2026Updated last week
- A tool for running bioinformatics workflows locally or in the cloud.☆30Dec 13, 2019Updated 6 years ago
- ☆93Feb 25, 2026Updated 3 weeks ago
- Storage driver implementations for BadWolf☆16Sep 18, 2018Updated 7 years ago
- ☆10Feb 28, 2018Updated 8 years ago
- Cloud Computing for Science and Engineering web site☆14Dec 7, 2017Updated 8 years ago