danro9685 / ASCETICLinks
ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal patterns involving alternations in driver genes from cancer genomics data. Manuscript published at: https://www.nature.com/articles/s41467-023-41670-3
☆12Updated 6 months ago
Alternatives and similar repositories for ASCETIC
Users that are interested in ASCETIC are comparing it to the libraries listed below
Sorting:
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Updated last year
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- ☆16Updated 3 years ago
- GWAS and rare variants tests at high speed using regenie☆15Updated 2 weeks ago
- ☆17Updated last year
- ☆12Updated last year
- Filter and prioritize fusion calls☆20Updated last year
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Updated 6 years ago
- End-guided RNA assembler☆15Updated 2 months ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆23Updated last month
- omics data analysis using clusterProfiler ;)☆15Updated last year
- The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (…☆14Updated 3 months ago
- Integrated workflow for SV calling from single-cell Strand-seq data☆24Updated 7 months ago
- Bedfile perturbation tool☆17Updated last month
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- ☆22Updated 9 months ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆14Updated last year
- DriverPower☆26Updated 9 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last month
- Multi-sample cancer phylogeny reconstruction☆35Updated 8 years ago
- ☆14Updated 5 months ago
- DRAGEN Tumor/Normal workflow post-processing☆23Updated 2 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Updated 6 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 5 years ago
- Model-based tumour subclonal deconvolution using population genetics☆33Updated 2 months ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Updated 2 years ago
- Python function for TMB snake plots☆16Updated 5 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Updated 5 years ago
- Implementation of FACETS for Terra☆12Updated 2 years ago