danro9685 / ASCETIC
ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal patterns involving alternations in driver genes from cancer genomics data. Manuscript published at: https://www.nature.com/articles/s41467-023-41670-3
☆11Updated 2 weeks ago
Alternatives and similar repositories for ASCETIC:
Users that are interested in ASCETIC are comparing it to the libraries listed below
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆15Updated last year
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- ☆15Updated 2 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆20Updated 2 weeks ago
- Comprehensive Human Expressed SequenceS☆16Updated 7 months ago
- ☆18Updated 8 months ago
- Workflow for Sequenza, cellularity and ploidy☆19Updated last week
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 6 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- Chromatin ACcessibility and Transcriptomics Unifying Software☆16Updated 5 months ago
- ☆13Updated 8 months ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Updated last year
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- ☆10Updated 4 years ago
- Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ra…☆11Updated last year
- Filter and prioritize fusion calls☆20Updated 5 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- ☆11Updated last year
- The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (…☆13Updated last year
- Whole genome workflows☆12Updated 4 months ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆13Updated 3 years ago
- ☆11Updated 2 years ago
- End-guided RNA assembler☆15Updated 4 months ago
- iread☆24Updated 3 years ago
- ☆12Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆13Updated 8 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 7 months ago
- Personalized prioritization of driver genes in cancer☆9Updated 3 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Updated 5 years ago