danro9685 / ASCETIC
ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal patterns involving alternations in driver genes from cancer genomics data. Manuscript published at: https://www.nature.com/articles/s41467-023-41670-3
☆11Updated 2 months ago
Alternatives and similar repositories for ASCETIC:
Users that are interested in ASCETIC are comparing it to the libraries listed below
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆14Updated 11 months ago
- ☆15Updated 2 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆20Updated 3 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆19Updated 2 months ago
- ☆18Updated 5 months ago
- iread☆23Updated 3 years ago
- Filter and prioritize fusion calls☆20Updated 3 months ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 5 years ago
- Personalized prioritization of driver genes in cancer☆9Updated 2 years ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆16Updated last week
- Isoform co-usage networks from single-cell RNA-seq data☆15Updated 10 months ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 5 months ago
- The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (…☆12Updated last year
- ☆25Updated last month
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers