common useful script
☆34Jun 8, 2026Updated last week
Alternatives and similar repositories for useful-scripts
Users that are interested in useful-scripts are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆10Oct 29, 2020Updated 5 years ago
- genome basic statistics tool (e.g. n50, n10, ng50,...)☆15Mar 5, 2012Updated 14 years ago
- Gene expression viewer template☆12Aug 30, 2017Updated 8 years ago
- fastq quality assessment and filtering tool☆17Dec 10, 2022Updated 3 years ago
- Visualising discordant reads☆15Sep 2, 2015Updated 10 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆11Oct 8, 2018Updated 7 years ago
- Toolbox package for organizing and working with TCGA data☆30May 25, 2026Updated 3 weeks ago
- Documentation for the ISB-CGC on Read the Docs.☆11Apr 15, 2026Updated 2 months ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆18Oct 25, 2024Updated last year
- Long read to rMATS☆32May 5, 2023Updated 3 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆66Mar 22, 2021Updated 5 years ago
- Gene network analysis☆20Dec 2, 2022Updated 3 years ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆62Jun 1, 2019Updated 7 years ago
- A tool to facilitate comparative visualisation of CLIP data☆17Nov 29, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Exploratory data analysis for pooled CRISPR/Cas9 screens☆21Mar 6, 2017Updated 9 years ago
- mgimond.github.io landing page☆17Jan 24, 2026Updated 4 months ago
- ☆17Jan 3, 2019Updated 7 years ago
- Repository of our application for human-augmented binning☆27Apr 26, 2021Updated 5 years ago
- CDS prediction in transcripts☆23Mar 5, 2025Updated last year
- Molecular Signatures Database (MSigDB) in a data frame☆16Dec 3, 2018Updated 7 years ago
- A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…☆50Mar 8, 2024Updated 2 years ago
- The NanoPipe pipeline analyzes reads generated by the Oxford Nanopore sequencing devices. As a result, it provides alignments to any targ…☆18Dec 21, 2018Updated 7 years ago
- Pipeline for finding circular RNAs from RNA-seq data, based on STAR. Used in (Westholm et al, Cell Reports, 2014).☆17Jan 17, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆19Oct 29, 2019Updated 6 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆57Jun 29, 2023Updated 2 years ago
- collection of bioinformatic scripts☆32May 3, 2024Updated 2 years ago
- Python CLI for alignment-free genomics.☆13May 25, 2026Updated 3 weeks ago
- Code, examples, reading list for JHU Frontiers of Sequencing Data Analysis class☆24Feb 3, 2014Updated 12 years ago
- Fast in-silico normalization algorithm for NGS data☆24Nov 1, 2021Updated 4 years ago
- My rstudio::conf 2018 presentation slides☆10Jan 16, 2023Updated 3 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37May 30, 2026Updated 2 weeks ago
- Annotate DNA sequences for Gene Ontology terms☆40Sep 11, 2025Updated 9 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Step-wise assembly of the neonatal virome modulated by breast feeding.☆11Aug 20, 2021Updated 4 years ago
- Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis tools☆11Apr 26, 2020Updated 6 years ago
- Core utilities for single-cell RNA-seq☆13Apr 6, 2026Updated 2 months ago
- ☆12Feb 14, 2023Updated 3 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆22Sep 16, 2019Updated 6 years ago
- defusion☆14Aug 24, 2021Updated 4 years ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Apr 25, 2019Updated 7 years ago