chunjie-sam-liu / useful-scriptsLinks
common useful script
☆32Updated last week
Alternatives and similar repositories for useful-scripts
Users that are interested in useful-scripts are comparing it to the libraries listed below
Sorting:
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- Integrative analysis of structural variations.☆40Updated 2 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Flexible Bayesian inference of mutational signatures☆38Updated 3 years ago
- ☆23Updated 3 weeks ago
- Evolutionary Transcriptomics with R☆47Updated last week
- Mapped QC analysis program☆43Updated 7 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 7 years ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆55Updated 4 years ago
- a set of NGS pipelines☆24Updated 3 weeks ago
- A small R package to make sequencing read coverage plots in R.☆40Updated last month
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated 9 months ago
- Make rapid visualizations of RNA-seq data in R☆20Updated 3 months ago
- An interactive web-tool for RNA-seq analysis☆70Updated last month
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 8 months ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- An efficient way to guess the library type of your RNA-Seq data.☆33Updated 3 years ago
- A pipeline for differential expression and differential alternative splicing analysis☆67Updated last year
- Adapters for trimming☆30Updated 7 years ago
- 📊 An R package of RNA-seq workflow☆15Updated 3 years ago
- Command-line utility to color objects of a KEGG pathway with arbitrary colors☆34Updated 10 years ago
- Nanopore data analysis in R☆40Updated 2 years ago
- ☆17Updated 3 years ago
- An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot☆28Updated 3 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at rea…☆26Updated 6 years ago