common useful script
☆33Jan 18, 2026Updated 3 months ago
Alternatives and similar repositories for useful-scripts
Users that are interested in useful-scripts are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Oct 29, 2020Updated 5 years ago
- Gene expression viewer template☆12Aug 30, 2017Updated 8 years ago
- fastq quality assessment and filtering tool☆18Dec 10, 2022Updated 3 years ago
- Visualising discordant reads☆15Sep 2, 2015Updated 10 years ago
- ☆11Oct 8, 2018Updated 7 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Toolbox package for organizing and working with TCGA data☆28Mar 26, 2026Updated 3 weeks ago
- Documentation for the ISB-CGC on Read the Docs.☆11Updated this week
- Chromatin ACcessibility and Transcriptomics Unifying Software☆17Oct 25, 2024Updated last year
- Long read to rMATS☆32May 5, 2023Updated 2 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Mar 22, 2021Updated 5 years ago
- Gene network analysis☆19Dec 2, 2022Updated 3 years ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆62Jun 1, 2019Updated 6 years ago
- A tool to facilitate comparative visualisation of CLIP data☆16Nov 29, 2023Updated 2 years ago
- Version 2.1.0 released☆23Sep 16, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Exploratory data analysis for pooled CRISPR/Cas9 screens☆21Mar 6, 2017Updated 9 years ago
- ☆17Jan 3, 2019Updated 7 years ago
- Repository of our application for human-augmented binning☆27Apr 26, 2021Updated 4 years ago
- CDS prediction in transcripts☆24Mar 5, 2025Updated last year
- Molecular Signatures Database (MSigDB) in a data frame☆16Dec 3, 2018Updated 7 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Feb 6, 2024Updated 2 years ago
- A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…☆51Mar 8, 2024Updated 2 years ago
- The NanoPipe pipeline analyzes reads generated by the Oxford Nanopore sequencing devices. As a result, it provides alignments to any targ…☆18Dec 21, 2018Updated 7 years ago
- Pipeline for finding circular RNAs from RNA-seq data, based on STAR. Used in (Westholm et al, Cell Reports, 2014).☆17Jan 17, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆19Oct 29, 2019Updated 6 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆57Jun 29, 2023Updated 2 years ago
- collection of bioinformatic scripts☆32May 3, 2024Updated last year
- Python CLI for alignment-free genomics.☆13Feb 11, 2026Updated 2 months ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Apr 6, 2026Updated last week
- Code, examples, reading list for JHU Frontiers of Sequencing Data Analysis class☆25Feb 3, 2014Updated 12 years ago
- Fast in-silico normalization algorithm for NGS data☆24Nov 1, 2021Updated 4 years ago
- My rstudio::conf 2018 presentation slides☆10Jan 16, 2023Updated 3 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Mar 9, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Annotate DNA sequences for Gene Ontology terms☆41Sep 11, 2025Updated 7 months ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- Step-wise assembly of the neonatal virome modulated by breast feeding.☆11Aug 20, 2021Updated 4 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Jun 6, 2019Updated 6 years ago
- Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis tools☆11Apr 26, 2020Updated 5 years ago
- Core utilities for single-cell RNA-seq☆13Apr 6, 2026Updated last week
- ☆13Feb 14, 2023Updated 3 years ago