A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, Cell (2014), 159:134-147)
☆62Jun 1, 2019Updated 6 years ago
Alternatives and similar repositories for CIRCexplorer
Users that are interested in CIRCexplorer are comparing it to the libraries listed below
Sorting:
- tools to find circRNAs in RNA-seq data☆45Nov 16, 2017Updated 8 years ago
- Pipeline for finding circular RNAs from RNA-seq data, based on STAR. Used in (Westholm et al, Cell Reports, 2014).☆17Jan 17, 2023Updated 3 years ago
- a tool for identifying circular RNAs using RNA-Seq data☆12Aug 10, 2015Updated 10 years ago
- circular RNA analysis toolset☆88Sep 8, 2024Updated last year
- Known and Novel IsoForm Explorer. Statistically based splicing detection for circular and linear isoforms☆33Jul 14, 2017Updated 8 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆38Aug 4, 2022Updated 3 years ago
- Find circRNAs in RNA-seq data.☆15Jul 5, 2016Updated 9 years ago
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- Analysis pipeline for our circSC manuscript☆14May 18, 2022Updated 3 years ago
- CircSplice☆12Feb 27, 2019Updated 7 years ago
- Scripts used in the analysis of C elegans dRNAseq data☆14Apr 7, 2024Updated last year
- Easily draw publication-quality figures of splicing quantitative trait loci☆16Feb 2, 2018Updated 8 years ago
- common useful script☆32Jan 18, 2026Updated last month
- circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line dri…☆30Dec 19, 2023Updated 2 years ago
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated last month
- An automated assembly pipeline for microbial genomes☆19Jan 15, 2026Updated last month
- ☆19Jun 8, 2023Updated 2 years ago
- ☆23May 16, 2020Updated 5 years ago
- An R package for annotation of circular RNAs☆11Mar 30, 2020Updated 5 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Apr 10, 2023Updated 2 years ago
- Request for comments on interchangeable bioinformatics containers☆39Jun 18, 2019Updated 6 years ago
- A bioinformatics tool for SV detection and virus integration discovery☆21Sep 12, 2017Updated 8 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- ☆14Dec 15, 2019Updated 6 years ago
- Validation of sycnmers compared to minimizers☆11May 10, 2025Updated 9 months ago
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 2 years ago
- An integrated web-based resource for mapping functional networks of long or circular forms of non-coding RNAs☆10Jul 13, 2019Updated 6 years ago
- The code for Daugherty, et al 2017 - Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans☆11Aug 24, 2017Updated 8 years ago
- Survival Analysis for Protein-Level TCGA Analysis☆11Nov 30, 2018Updated 7 years ago
- Fast spliced aligner with low memory requirements☆41Sep 8, 2015Updated 10 years ago
- splicing and feature maps for RBPs☆25Apr 19, 2022Updated 3 years ago
- direct comparison of circular and linear RNA expression☆24Jan 17, 2021Updated 5 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆294Nov 6, 2025Updated 3 months ago
- Microbiome Protocol eBook related documents and scripts.☆49Jun 11, 2021Updated 4 years ago
- co-expressed gene-set enrichment analysis☆13Nov 20, 2023Updated 2 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Apr 16, 2021Updated 4 years ago
- DOLPHIN: Advances Single-cell RNA-seq Analysis Beyond Gene-Level by Integrating Exon-Level Quantification and Junction Reads with Deep Ne…☆14Jul 16, 2025Updated 7 months ago
- ☆11Sep 17, 2020Updated 5 years ago