YangLab / CIRCexplorerLinks
A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, Cell (2014), 159:134-147)
☆62Updated 6 years ago
Alternatives and similar repositories for CIRCexplorer
Users that are interested in CIRCexplorer are comparing it to the libraries listed below
Sorting:
- A tool for bigWig files.☆118Updated 7 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆78Updated 5 years ago
- microRNA profiling pipeline☆80Updated 4 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆94Updated 8 years ago
- nucleosome calling using ATAC-seq☆110Updated 5 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆38Updated 3 years ago
- RNA-seq data analysis practical☆62Updated 11 years ago
- ☆89Updated 5 years ago
- reproduce the functional enrichment analysis presented in GTEx paper using clusterProfiler/DOSE☆33Updated 4 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆100Updated 4 years ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- circular RNA analysis toolset☆87Updated last year
- Tools for processing UMI RNA-tag data☆131Updated 2 years ago
- Analysis pipeline for the GUIDE-seq assay.☆81Updated 2 years ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆48Updated 12 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- ☆62Updated 5 years ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- Reference data: BED files, genes, transcripts, variations.☆89Updated 8 years ago
- An R package for inferring the subclonal architecture of tumors☆121Updated 2 years ago
- Transcript quantification import for modular pipelines☆142Updated 4 months ago
- A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets☆84Updated 3 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆87Updated last year
- ☆57Updated 5 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆62Updated 5 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆50Updated 6 months ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Updated 4 years ago
- tools to find circRNAs in RNA-seq data☆45Updated 8 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆73Updated last year