YangLab / CIRCexplorerLinks
A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, Cell (2014), 159:134-147)
☆62Updated 6 years ago
Alternatives and similar repositories for CIRCexplorer
Users that are interested in CIRCexplorer are comparing it to the libraries listed below
Sorting:
- microRNA profiling pipeline☆79Updated 3 years ago
- A tool for bigWig files.☆118Updated 7 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆78Updated 5 years ago
- ☆89Updated 5 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆94Updated 8 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- nucleosome calling using ATAC-seq☆109Updated 5 years ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆48Updated 12 years ago
- circular RNA analysis toolset☆86Updated last year
- tools to find circRNAs in RNA-seq data☆44Updated 8 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆83Updated 11 months ago
- Known and Novel IsoForm Explorer. Statistically based splicing detection for circular and linear isoforms☆33Updated 8 years ago
- A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets☆84Updated 3 years ago
- identifying mutational significance in cancer genomes☆62Updated 3 years ago
- Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA☆77Updated 5 years ago
- RNA-seq data analysis practical☆61Updated 11 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- An R package for inferring the subclonal architecture of tumors☆122Updated 2 years ago
- ☆62Updated 5 years ago
- Collection of CGAT NGS Pipelines☆43Updated 7 years ago
- Tools for processing UMI RNA-tag data☆131Updated 2 years ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- ☆57Updated 5 years ago
- R package for bcbio RNA-seq analysis.☆63Updated last year
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation☆137Updated 3 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- Quality of RNA-Seq Toolset☆53Updated 6 years ago