Interactive R package to quantify, analyse and visualise alternative splicing
☆37May 11, 2026Updated 2 weeks ago
Alternatives and similar repositories for psichomics
Users that are interested in psichomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Sep 29, 2025Updated 8 months ago
- A unified downloader+preprocessor for cancer genomics datasets☆16Apr 7, 2024Updated 2 years ago
- Motif Scan and Enrichment Analysis (MoSEA)☆17Oct 6, 2020Updated 5 years ago
- The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…☆30May 19, 2017Updated 9 years ago
- VETA - A simple tool do evaluate variant predictors☆11Jun 17, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Apr 10, 2020Updated 6 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆300Nov 6, 2025Updated 6 months ago
- ☆10Oct 17, 2019Updated 6 years ago
- Mapping Alternative Splicing Events to pRoteins☆21Feb 8, 2022Updated 4 years ago
- Landscape Single Cell Entropy☆23Aug 24, 2020Updated 5 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆94Apr 29, 2026Updated last month
- ☆18May 31, 2024Updated last year
- ☆17Jul 19, 2024Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Feb 12, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15May 3, 2022Updated 4 years ago
- ☆55Aug 1, 2024Updated last year
- An online database of variants functionally demonstrated to affect (or not affect) splicing.☆11Apr 28, 2026Updated last month
- DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data☆32May 1, 2025Updated last year
- A tool for investigating alternative mRNA splicing in next generation mRNA sequence data.☆12Mar 3, 2017Updated 9 years ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆115Feb 7, 2024Updated 2 years ago
- Long read to rMATS☆32May 5, 2023Updated 3 years ago
- Package to calculate functional similarity between genes https://biocor.llrs.dev☆14Oct 20, 2025Updated 7 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆57Jun 29, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Annotated sequence data☆11Feb 2, 2025Updated last year
- ☆23Jun 7, 2024Updated last year
- splicing and feature maps for RBPs☆25Apr 26, 2026Updated last month
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 4 years ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Nov 4, 2019Updated 6 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Apr 10, 2023Updated 3 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Sep 24, 2015Updated 10 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Jan 18, 2021Updated 5 years ago
- Somatic point mutation caller☆17Jul 8, 2016Updated 9 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Superseded by https://github.com/MD-Anderson-Bioinformatics/BatchEffectsPackage☆12Aug 13, 2020Updated 5 years ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆138Aug 21, 2024Updated last year
- ShinyLearner: a software framework for performing benchmarks of machine-learning classification algorithms☆18Dec 15, 2021Updated 4 years ago
- µbinfie blog☆19Jul 21, 2025Updated 10 months ago
- ☆10May 17, 2024Updated 2 years ago
- ☆13Nov 21, 2019Updated 6 years ago
- TeraPCA is a multithreaded C++ software suite based on Intel's MKL library (or any other BLAS and/or LAPACK distribution). TeraPCA featur…☆15Jul 25, 2022Updated 3 years ago