xOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, vbaf097.
☆39Feb 6, 2026Updated 5 months ago
Alternatives and similar repositories for xOmicsShiny
Users that are interested in xOmicsShiny are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- bioInfograph: an online tool to design and display multi-panel scientific figure interactively☆11Mar 2, 2022Updated 4 years ago
- Quickomics: exploring omics data in an intuitive, interactive and informative manner. Bioinformatics. 2021 Apr 26:btab255.☆43Updated this week
- bioInfograph: an online tool to design and display multi-panel scientific figure interactively☆12Feb 15, 2022Updated 4 years ago
- ☆18Jul 2, 2026Updated 3 weeks ago
- SUmmarizing Multiple Enrichment analysis Results☆10Nov 14, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆164Jun 23, 2026Updated last month
- ☆15Mar 13, 2024Updated 2 years ago
- OmicsView: omics data analysis through interactive visual analytics☆16Apr 13, 2022Updated 4 years ago
- CompBioAgent: An LLM-powered agent for single-cell RNA-seq data exploration. https://doi.org/10.1101/2025.03.17.643771☆16Apr 25, 2025Updated last year
- Shiny server configuration with Nginx load balancer☆27May 4, 2024Updated 2 years ago
- ScaleSC: A superfast and scalable single cell RNA-seq data analysis pipeline powered by GPU. https://doi.org/10.1093/bioadv/vbaf167☆41Jan 10, 2026Updated 6 months ago
- python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.☆36Mar 9, 2026Updated 4 months ago
- ☆36Apr 24, 2026Updated 3 months ago
- Calibrated clustering via knockoffs for single-cell genomics☆11Feb 13, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Nov 22, 2017Updated 8 years ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Nov 30, 2020Updated 5 years ago
- Python tools for proteogenomics analysis toolkit☆17May 23, 2026Updated 2 months ago
- quantms workflow for DIANN tool including DIA and DDA analysis☆17Jun 16, 2026Updated last month
- FusionProt: Fusing Sequence and Structural Information for Unified Protein Representation Learning☆18Dec 13, 2025Updated 7 months ago
- A library for QC report based on MultiQC framework☆34Updated this week
- KDS software for Kinase Drug Selectivity☆10Jun 22, 2026Updated last month
- Shiny app to easily create publishable plots for scientific papers☆41Aug 9, 2025Updated 11 months ago
- GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF☆19Oct 30, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆79Jan 17, 2025Updated last year
- ☆13May 24, 2026Updated 2 months ago
- SODAR: System for Omics Data Access and Retrieval☆22Updated this week
- High-performance sparse data representation and manipulation in R☆11May 1, 2026Updated 2 months ago
- Python package to load and query ARCHS4 data☆28Jul 6, 2026Updated 2 weeks ago
- A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research☆19Jul 15, 2026Updated last week
- ☆29Jun 12, 2026Updated last month
- ☆15Jan 18, 2023Updated 3 years ago
- ☆12Sep 8, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Shiny web app for mapping datasets using Seurat v4☆150May 22, 2026Updated 2 months ago
- SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.☆15Mar 26, 2026Updated 3 months ago
- A docker image for single-cell analysis☆108Apr 18, 2026Updated 3 months ago
- SDRF official validator and converts SDRF to pipeline configuration files☆36Jul 11, 2026Updated last week
- Chat offline with open-source LLMs like deepseek-r1, nemotron, qwen, llama and more all through a simple R package powered by Shiny and O…☆22Mar 12, 2025Updated last year
- UMCU Genetics Nextflow modules☆30Oct 25, 2024Updated last year
- ☆36May 28, 2026Updated last month