Alternatives and similar repositories for xOmicsShiny

Users that are interested in xOmicsShiny are comparing it to the libraries listed below

• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆51Updated 2 months ago
• dbdimitrov / BingleSeq
  BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses
  ☆21Updated 3 years ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆39Updated 2 years ago
• dzhakparov / GeneSelectR
  ☆19Updated 11 months ago
• frattalab / splicing
  Snakemake pipeline for running MAJIQ
  ☆22Updated last year
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆16Updated 3 years ago
• nf-core / scflow
  Please consider using/contributing to https://github.com/nf-core/scdownstream
  ☆25Updated 11 months ago
• ajitjohnson / imsig
  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
  ☆27Updated 4 years ago
• ConesaLab / TCR_nextflow
  ☆12Updated 3 years ago
• montilab / BS831
  Course Materials for Genomics Data Mining
  ☆22Updated 3 months ago
• Core-Bioinformatics / bulkAnalyseR
  ☆27Updated last year
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• combiz / scFlow
  Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
  ☆56Updated last year
• BorchLab / Ibex
  Using BCR and expression for sequence embedding
  ☆21Updated last month
• Teichlab / cell2tcr
  Inference of TCR motifs
  ☆30Updated 2 weeks ago
• crazyhottommy / scRNA-seq-workshop-Fall-2019
  Harvard FAS informatics scRNAseq workshop website
  ☆37Updated 5 years ago
• liuhong-jia / scAnno
  ☆24Updated 2 years ago
• rnabioco / djvdj
  An R package to analyze single-cell V(D)J data
  ☆25Updated last year
• nasqar / ClusterProfShinyGSEA
  A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries
  ☆18Updated 5 years ago
• dzhang32 / dasper
  Detecting Aberrant Splicing Events from RNA-sequencing data
  ☆16Updated 5 months ago
• julienroyulaval / DESeq2-MultiBatch
  Batch Correction and Adaptive Contrast Calling in Complex RNA-seq Experimental Designs Using DESeq2
  ☆15Updated 2 weeks ago
• wwylab / DeMixT
  ☆36Updated 10 months ago
• maxplanck-ie / 10X_snakepipe
  A snakemake pipeline for 10X genomics cellranger
  ☆20Updated 4 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆42Updated last year
• HelenaLC / muscat-comparison
  ☆12Updated last year
• alserglab / phantasus
  Visual exploratory analysis of gene expression data
  ☆43Updated last week
• KirstLab / asc_seurat
  ☆24Updated 9 months ago
• Papatheodorou-Group / CATD_snakemake
  Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…
  ☆15Updated 2 weeks ago
• luciorq / isoformic
  Isoform-level functional RNA-Seq analysis 🧬
  ☆25Updated 5 months ago
• interactivereport / Quickomics
  Quickomics: exploring omics data in an intuitive, interactive and informative manner. Bioinformatics. 2021 Apr 26:btab255.
  ☆41Updated 2 weeks ago