xOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, vbaf097.
☆39Feb 6, 2026Updated 6 months ago
Alternatives and similar repositories for xOmicsShiny
Users that are interested in xOmicsShiny are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- bioInfograph: an online tool to design and display multi-panel scientific figure interactively☆11Mar 2, 2022Updated 4 years ago
- Quickomics: exploring omics data in an intuitive, interactive and informative manner. Bioinformatics. 2021 Apr 26:btab255.☆43Aug 26, 2026Updated last week
- ☆18Jul 2, 2026Updated 2 months ago
- CellDepot: A unified repository for scRNA-seq data and visual exploration. J Mol Biol. 2021 Dec 28:167425. doi: 10.1016/j.jmb.2021.167425…☆24Apr 24, 2023Updated 3 years ago
- SUmmarizing Multiple Enrichment analysis Results☆10Nov 14, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- scRNASequest: an ecosystem of scRNA-seq analysis, visualization and publishing. BMC Genomics 24, 228 (2023).☆28Feb 4, 2026Updated 6 months ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆165Jun 23, 2026Updated 2 months ago
- ☆15Mar 13, 2024Updated 2 years ago
- OmicsView: omics data analysis through interactive visual analytics☆16Apr 13, 2022Updated 4 years ago
- Shiny server configuration with Nginx load balancer☆27May 4, 2024Updated 2 years ago
- ScaleSC: A superfast and scalable single cell RNA-seq data analysis pipeline powered by GPU. https://doi.org/10.1093/bioadv/vbaf167☆41Jan 10, 2026Updated 7 months ago
- python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.☆36Mar 9, 2026Updated 5 months ago
- ☆36Apr 24, 2026Updated 4 months ago
- Calibrated clustering via knockoffs for single-cell genomics☆11Feb 13, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Nov 22, 2017Updated 8 years ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Nov 30, 2020Updated 5 years ago
- Python tools for proteogenomics analysis toolkit☆17May 23, 2026Updated 3 months ago
- quantms workflow for DIANN tool including DIA and DDA analysis☆18Aug 15, 2026Updated 2 weeks ago
- A library for QC report based on MultiQC framework☆34Aug 13, 2026Updated 2 weeks ago
- KDS software for Kinase Drug Selectivity☆10Jun 22, 2026Updated 2 months ago
- Shiny app to easily create publishable plots for scientific papers☆43Aug 9, 2025Updated last year
- GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF☆19Oct 30, 2020Updated 5 years ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆79Jan 17, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆13May 24, 2026Updated 3 months ago
- SODAR: System for Omics Data Access and Retrieval☆23Updated this week
- Python package to load and query ARCHS4 data☆31Jul 6, 2026Updated last month
- A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research☆19Aug 10, 2026Updated 3 weeks ago
- ☆30Aug 17, 2026Updated 2 weeks ago
- ☆15Jan 18, 2023Updated 3 years ago
- ☆12Sep 8, 2021Updated 4 years ago
- A Shiny web app for mapping datasets using Seurat v4☆151May 22, 2026Updated 3 months ago
- SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.☆15Mar 26, 2026Updated 5 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- SDRF official validator and converts SDRF to pipeline configuration files☆37Updated this week
- ☆15Nov 7, 2024Updated last year
- Code and documentation for the curation of cellxgene datasets☆58Aug 21, 2026Updated last week
- App for serotonergic targets☆12Jan 8, 2026Updated 7 months ago
- R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis☆33Jun 12, 2026Updated 2 months ago
- Spatial One☆32Oct 31, 2024Updated last year
- Contextual AI models for single-cell protein biology☆110May 7, 2026Updated 3 months ago