interactivereport / xOmicsShiny
R Shiny application for cross omics data analysis. In revision with Bioinformatics Adv.
☆24Updated last week
Alternatives and similar repositories for xOmicsShiny:
Users that are interested in xOmicsShiny are comparing it to the libraries listed below
- Explore the cancer relevance of your gene list☆50Updated last month
- Toolkit for benchmarking fusion transcript predictions☆18Updated 7 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆16Updated 3 weeks ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆23Updated 4 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆22Updated 3 months ago
- ☆24Updated 2 years ago
- ☆20Updated last year
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 7 months ago
- ☆24Updated 7 months ago
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Updated 3 months ago
- ☆12Updated 10 months ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆24Updated 9 months ago
- An R package for analyzing high-dimensional cytometry data using the tidyverse.☆18Updated 7 months ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆27Updated 3 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- SCASA: Single cell transcript quantification tool☆20Updated last year
- Inference of TCR motifs☆29Updated last week
- Using BCR and expression for sequence embedding☆21Updated 2 weeks ago
- A snakemake pipeline for 10X genomics cellranger☆20Updated 3 months ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆14Updated 2 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Motif manipulation functions for R.☆28Updated 4 months ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆27Updated 5 months ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 9 months ago
- Single-cell RNA Processing Software☆11Updated 5 months ago
- ☆36Updated 8 months ago