chunjie-sam-liu / GSCALiteLinks
GSCALite: Gene set for cancer analysis
☆23Updated 3 years ago
Alternatives and similar repositories for GSCALite
Users that are interested in GSCALite are comparing it to the libraries listed below
Sorting:
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆53Updated 2 months ago
- ☆41Updated 7 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 4 years ago
- Identify and correct invalid gene symbols☆59Updated 10 months ago
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆18Updated 6 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- ☆30Updated 7 years ago
- Toolbox with R scripts☆38Updated 7 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- A General Framework for Consensus Partitioning☆63Updated 8 months ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 4 years ago
- ☆31Updated 5 years ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆23Updated 3 months ago
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets☆23Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Dichotomous of innate immune landscape☆17Updated 6 years ago
- ☆47Updated 5 years ago
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…☆43Updated 3 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- Analysis notebooks and data for AML hierarchies paper☆16Updated 2 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- LncmiRSRN: Identifying lncRNA related miRNA sponge regulatory network☆13Updated 3 years ago
- An r package that works as a wrapper to homologene☆46Updated last year
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆65Updated 2 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- R package☆22Updated last year