Alternatives and similar repositories for deep-stroma-histology

Users that are interested in deep-stroma-histology are comparing it to the libraries listed below

• qalid7 / compath
  deep learning pipeline repository for the paper "Geospatial immune variability illuminates differential evolution of lung adenocarcinoma…
  ☆52Updated 5 years ago
• hwanglab / tcga_tmb_prediction
  TCGA BLCA tmb prediction by Hongming Xu
  ☆13Updated 4 years ago
• icbi-lab / IHCount
  IHC-image analysis workflow
  ☆23Updated 7 years ago
• gerstung-lab / PC-CHiP
  Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis
  ☆77Updated 4 years ago
• jnkather / DeepHistology
  A pan-cancer platform for mutation prediction from routine histology
  ☆69Updated 4 years ago
• huangzhii / SALMON
  SALMON: Survival Analysis Learning with Multi-Omics Neural Networks
  ☆69Updated 10 months ago
• lanagarmire / cox-nnet
  ☆47Updated 8 years ago
• SBU-BMI / u24_lymphocyte
  ☆31Updated 4 years ago
• millett / pathology_learning
  Using traditional machine learning and deep learning methods to predict stuff from TCGA pathology slides.
  ☆18Updated 6 years ago
• SBU-BMI / quip_distro
  ☆32Updated last year
• yufu2015 / PC-CHiP
  Pan-cancer quantitative histopathology analysis using deep learning
  ☆11Updated 3 years ago
• BodenmillerGroup / SCPathology_publication
  The Single-Cell Pathology Landscape of Breast Cancer
  ☆27Updated 5 years ago
• msk-mind / luna
  Scripts for data processing
  ☆45Updated last year
• tabibusairam / Pan-Renal-cancer
  ☆11Updated 6 years ago
• owkin / HE2RNA_code
  Train a model to predict gene expression from histology slides.
  ☆106Updated 3 years ago
• javadnoorb / HistCNN
  A set of codes to classify H&E slides using deep learning
  ☆30Updated 3 years ago
• KatherLab / deepmed
  ☆49Updated 3 years ago
• drmaxchen-gbc / HCC-deep-learning
  HCC_Deep_learning
  ☆19Updated 5 years ago
• gevaertlab / sequoia-pub
  SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention
  ☆42Updated 2 months ago
• labsyspharm / CRC_atlas_2022
  ☆16Updated 4 months ago
• traversc / cox-nnet
  ☆36Updated 7 years ago
• GlastonburyC / RNAPath
  Self-supervised representation learning combining GTEx histology, RNA-seq and WGS
  ☆30Updated 4 months ago
• ShahiraAbousamra / til_classification
  ☆15Updated last year
• Path-AI / hif2gene
  Data and code to accompany our Nature publication
  ☆46Updated 3 years ago
• ICGC-TCGA-PanCancer / TumorType-WGS
  Classifying tumor types based on Whole Genome Sequencing (WGS) data
  ☆48Updated last year
• Henrik86 / Topological-tumour-graphs
  ☆11Updated 5 years ago
• Zaoqu-Liu / MOFS
  Multimodality Fusion Subtyping (Nature Communications)
  ☆25Updated 4 months ago
• daniel-munro / imageCCA
  Code for preparing and running the imageCCA method.
  ☆20Updated 8 years ago
• googlebaba / StableCox
  Nature machine intelligence-Stable Cox Regression for Survival Analysis under Distribution Shifts
  ☆20Updated 4 months ago
• qupath / qupath-extension-stardist
  QuPath extension to run StarDist nucleus detection
  ☆43Updated last month