sarbal / EGAD
Gene network analysis
☆19Updated 2 years ago
Alternatives and similar repositories for EGAD:
Users that are interested in EGAD are comparing it to the libraries listed below
- Machine learning use cases for teaching☆13Updated 7 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 11 months ago
- Examples of kallisto + sleuth☆11Updated 7 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 9 months ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- stageR package☆12Updated 2 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 7 months ago
- Differential ATAC-seq toolkit☆27Updated last year
- Template for building a bioconductor workshop package using github actions☆20Updated 9 months ago
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆13Updated 3 weeks ago
- Single Cell multimodal data scripts for downloading datasets☆17Updated 3 weeks ago
- Tutorials in datamining and bioinformatics☆12Updated last year
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- gkmSVM R package☆17Updated 7 years ago
- Interactive benchmarking of ranking and assignment methods☆16Updated 3 weeks ago
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆21Updated 4 months ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 5 years ago
- Repository for supplemental material of manuscripts☆18Updated 3 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- TOP results by CONfident efFECT Sizes.☆14Updated 4 months ago
- iS-CellR: interactive graphical tool for analysis of single-cell RNAseq data☆24Updated 5 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago