sarbal / EGADLinks
Gene network analysis
☆19Updated 2 years ago
Alternatives and similar repositories for EGAD
Users that are interested in EGAD are comparing it to the libraries listed below
Sorting:
- Template for building a bioconductor workshop package using github actions☆21Updated 3 months ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆31Updated last week
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆14Updated 5 months ago
- Examples of kallisto + sleuth☆11Updated 8 years ago
- Interactive benchmarking of ranking and assignment methods☆14Updated 2 months ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆43Updated 2 months ago
- Machine learning use cases for teaching☆13Updated 8 years ago
- home of the bear's lair☆10Updated 8 years ago
- iDEP: integrated Differential Expression & Pathway analysis☆14Updated 6 years ago
- R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)☆24Updated 4 months ago
- This is the ensembldb development repository.☆35Updated last month
- Super high performance interactive heatmap software☆31Updated 6 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆18Updated 7 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated 10 months ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- Single sample network reconstruction in R☆23Updated 5 years ago
- The blog of tidyomics☆14Updated 2 months ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆21Updated 3 weeks ago
- The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.☆35Updated last year
- Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…☆11Updated 5 years ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆30Updated 5 months ago
- SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package☆17Updated 5 years ago
- countsimQC - Compare characteristic features of count data sets☆29Updated 2 months ago
- 16S rRNA Sequencing Data from the Human Microbiome Project☆10Updated 5 months ago
- Bioconductor package that makes BIG data pint-sized.☆21Updated last year
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Updated 3 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆10Updated last year
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 11 years ago
- A Grammar of Data Manipulation for Omics Data☆21Updated 5 years ago