ElliotXie / CASSIALinks
CASSIA: A multiagent llm based single cell Annottaion framework
☆49Updated 2 weeks ago
Alternatives and similar repositories for CASSIA
Users that are interested in CASSIA are comparing it to the libraries listed below
Sorting:
- SGS, is a user-friendly, collaborative and versatile browser for visualizing single-cell and spatial multiomics data.☆101Updated 8 months ago
 - The First Innovative Tool to Comprehensively Assess T Cell States☆110Updated 7 months ago
 - Improving Personalized Prediction of Cancer Prognoses with Clonal Evolution Models☆22Updated 6 years ago
 - ☆21Updated 9 months ago
 - IMC_Denoise: a software package to enhance Imaging Mass Cytometry - Nature Communications☆54Updated last year
 - Kun-peng: an ultra-fast, low-memory footprint and accurate taxonomy classifier for all☆124Updated this week
 - GENERator: A Long-Context Generative Genomic Foundation Model☆434Updated last week
 - Predicting multiple cancer phenotypes based on somatic genomic alterations via the genomic impact transformer☆63Updated 5 years ago
 - Algorithm to identify chromatin fountains☆21Updated last year
 - SSAlign☆45Updated 2 months ago
 - ☆11Updated 3 years ago
 - code implementing methods for pooling bulk and single cell data and FISH data for copy number deconvolution☆10Updated 5 years ago
 - GENERanno: A Genomic Foundation Model for Metagenomic Annotation☆301Updated last month
 - SCassist : An AI Based Workflow Assistant for Single-Cell Analysis☆30Updated 2 months ago
 - ☆24Updated 2 years ago
 - A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Updated 7 months ago
 - Accurate Typing of Diverse Immune-Related Gene Families from Long-Read Sequencing Data. It can handle HLA, KIR, IG, TCR, CYP gene familie…☆29Updated 2 months ago
 - Drug Response Estimation from single-cell Expression Profiles☆11Updated last year
 - R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆31Updated 2 years ago
 - Gene group activity utility functions for Scanpy☆94Updated 10 months ago
 - ☆38Updated last year
 - ☆41Updated 4 years ago
 - Robust identification of perturbed cell types in single-cell RNA-seq data☆34Updated 11 months ago
 - ☆46Updated last week
 - Functions for single cell data analysis☆32Updated 4 years ago
 - Estimation of Single-Cell Potency with Single Cell Entropy☆43Updated 2 years ago
 - Senescent Cell Identification☆44Updated last year
 - Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 2 months ago
 - ☆37Updated last month
 - ☆13Updated last year