ElliotXie / CASSIALinks
CASSIA: A multiagent llm based single cell Annottaion framework
☆49Updated this week
Alternatives and similar repositories for CASSIA
Users that are interested in CASSIA are comparing it to the libraries listed below
Sorting:
- SGS, is a user-friendly, collaborative and versatile browser for visualizing single-cell and spatial multiomics data.☆101Updated 7 months ago
- The First Innovative Tool to Comprehensively Assess T Cell States☆109Updated 6 months ago
- ☆21Updated 8 months ago
- Improving Personalized Prediction of Cancer Prognoses with Clonal Evolution Models☆22Updated 6 years ago
- Kun-peng: an ultra-fast, low-memory footprint and accurate taxonomy classifier for all☆125Updated last month
- IMC_Denoise: a software package to enhance Imaging Mass Cytometry - Nature Communications☆54Updated last year
- GENERator: A Long-Context Generative Genomic Foundation Model☆431Updated last week
- Algorithm to identify chromatin fountains☆21Updated last year
- Accurate Typing of Diverse Immune-Related Gene Families from Long-Read Sequencing Data. It can handle HLA, KIR, IG, TCR, CYP gene familie…☆29Updated last month
- Predicting multiple cancer phenotypes based on somatic genomic alterations via the genomic impact transformer☆63Updated 5 years ago
- GENERanno: A Genomic Foundation Model for Metagenomic Annotation☆300Updated 2 weeks ago
- ☆11Updated 3 years ago
- SSAlign☆45Updated last month
- code implementing methods for pooling bulk and single cell data and FISH data for copy number deconvolution☆10Updated 5 years ago
- ☆12Updated last year
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆51Updated 11 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 2 months ago
- ☆27Updated last month
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆28Updated last year
- ☆31Updated 7 months ago
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆10Updated last year
- Code used to process the data of the HBCA project☆32Updated last year
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 7 months ago
- MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…☆43Updated 7 months ago
- ☆54Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 5 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆65Updated 11 months ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated last month
- Robust identification of perturbed cell types in single-cell RNA-seq data☆33Updated 10 months ago
- ☆29Updated 2 years ago