Alternatives and similar repositories for CASSIA

Users that are interested in CASSIA are comparing it to the libraries listed below

• fanglu0411 / sgs
  SGS, is a user-friendly, collaborative and versatile browser for visualizing single-cell and spatial multiomics data.
  ☆102Updated 5 months ago
• GuoBioinfoLab / TCellSI
  The First Innovative Tool to Comprehensively Assess T Cell States
  ☆107Updated 4 months ago
• CMUSchwartzLab / cancer-phylogenetics-prognostic-prediction
  Improving Personalized Prediction of Cancer Prognoses with Clonal Evolution Models
  ☆22Updated 5 years ago
• CMUSchwartzLab / TUSV-ext
  ☆21Updated 6 months ago
• PENGLU-WashU / IMC_Denoise
  IMC_Denoise: a software package to enhance Imaging Mass Cytometry - Nature Communications
  ☆51Updated 11 months ago
• eric9n / Kun-peng
  Kun-peng: an ultra-fast, low-memory footprint and accurate taxonomy classifier for all
  ☆125Updated 3 months ago
• zzdzr / Fun
  Algorithm to identify chromatin fountains
  ☆21Updated last year
• yifengtao / genome-transformer
  Predicting multiple cancer phenotypes based on somatic genomic alterations via the genomic impact transformer
  ☆64Updated 5 years ago
• CMUSchwartzLab / RADs
  ☆11Updated 3 years ago
• GenerTeam / GENERator
  GENERator: A Long-Context Generative Genomic Foundation Model
  ☆430Updated 2 weeks ago
• CMUSchwartzLab / FISH_deconvolution
  code implementing methods for pooling bulk and single cell data and FISH data for copy number deconvolution
  ☆10Updated 5 years ago
• GenerTeam / GENERanno
  GENERanno: A Genomic Foundation Model for Metagenomic Annotation
  ☆302Updated 2 weeks ago
• deepomicslab / SpecImmune
  Accurate Typing of Diverse Immune-Related Gene Families from Long-Read Sequencing Data. It can handle HLA, KIR, IG, TCR, CYP gene familie…
  ☆24Updated this week
• JinmiaoChenLab / ezSingleCell2
  ☆56Updated last year
• ISYSLAB-HUST / SSAlign
  SSAlign
  ☆44Updated this week
• Teichlab / vascular_atlas
  Repo with analysis code for the vascular atlas paper
  ☆9Updated 8 months ago
• GuoBioinfoLab / STCAT
  The single T cell annotation tool for scRNA-seq data
  ☆15Updated 3 months ago
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆43Updated this week
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆64Updated 9 months ago
• Teichlab / PanGIAtlas
  Integration of gut cell atlases
  ☆27Updated 5 months ago
• QiangShiPKU / CoVarNet
  ☆37Updated this week
• bioinfo-biols / SEVtras
  sEV-containing droplet identification in scRNA-seq data (SEVtras)
  ☆26Updated 5 months ago
• Qile0317 / APackOfTheClones
  Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …
  ☆17Updated last week
• Teichlab / HCA_Heart_ver2
  ☆37Updated 2 years ago
• Banovich-Lab / Spatial_PF
  ☆29Updated 3 weeks ago
• KChen-lab / METAFlux
  ☆68Updated last year
• NIH-NEI / SCassist
  SCassist : An AI Based Workflow Assistant for Single-Cell Analysis
  ☆21Updated 3 weeks ago
• chloelulu / scMayoMap
  ☆22Updated last year
• favilaco / deconv_matching_bulk_scnRNA
  Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"
  ☆16Updated 2 years ago
• Coolgenome / PDAC
  ☆18Updated 5 months ago