Alternatives and similar repositories for CASSIA

Users that are interested in CASSIA are comparing it to the libraries listed below

• fanglu0411 / sgs
  SGS, is a user-friendly, collaborative and versatile browser for visualizing single-cell and spatial multiomics data.
  ☆100Updated 4 months ago
• GuoBioinfoLab / TCellSI
  The First Innovative Tool to Comprehensively Assess T Cell States
  ☆107Updated 4 months ago
• CMUSchwartzLab / cancer-phylogenetics-prognostic-prediction
  Improving Personalized Prediction of Cancer Prognoses with Clonal Evolution Models
  ☆22Updated 5 years ago
• CMUSchwartzLab / TUSV-ext
  ☆21Updated 5 months ago
• PENGLU-WashU / IMC_Denoise
  IMC_Denoise: a software package to enhance Imaging Mass Cytometry - Nature Communications
  ☆51Updated 11 months ago
• eric9n / Kun-peng
  Kun-peng: an ultra-fast, low-memory footprint and accurate taxonomy classifier for all
  ☆125Updated 2 months ago
• yifengtao / genome-transformer
  Predicting multiple cancer phenotypes based on somatic genomic alterations via the genomic impact transformer
  ☆64Updated 5 years ago
• zzdzr / Fun
  Algorithm to identify chromatin fountains
  ☆21Updated last year
• GenerTeam / GENERator
  GENERator: A Long-Context Generative Genomic Foundation Model
  ☆425Updated 3 weeks ago
• GenerTeam / GENERanno
  GENERanno: A Genomic Foundation Model for Metagenomic Annotation
  ☆227Updated 3 weeks ago
• CMUSchwartzLab / FISH_deconvolution
  code implementing methods for pooling bulk and single cell data and FISH data for copy number deconvolution
  ☆10Updated 5 years ago
• CMUSchwartzLab / RADs
  ☆11Updated 3 years ago
• deepomicslab / SpecImmune
  Accurate Typing of Diverse Immune-Related Gene Families from Long-Read Sequencing Data. It can handle HLA, KIR, IG, TCR, CYP gene familie…
  ☆24Updated this week
• ISYSLAB-HUST / SSAlign
  ☆32Updated 3 weeks ago
• GuoBioinfoLab / STCAT
  The single T cell annotation tool for scRNA-seq data
  ☆14Updated 2 months ago
• Teichlab / vascular_atlas
  Repo with analysis code for the vascular atlas paper
  ☆9Updated 7 months ago
• chloelulu / scMayoMap
  ☆22Updated last year
• JerryZhang-1222 / starTracer
  A High Effect Marker Gene Search Tool for Single-cell RNA-seq Analysis
  ☆32Updated 10 months ago
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆63Updated 8 months ago
• BioBam / scMaSigPro
  Implementation of MaSigPro for scRNA-Seq Data
  ☆14Updated 11 months ago
• maese005 / oncoPredict
  ☆9Updated last year
• ludvigla / semla
  ☆88Updated last week
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆69Updated 9 months ago
• QiangShiPKU / CoVarNet
  ☆33Updated 3 weeks ago
• perou-lab / MultiK
  MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…
  ☆22Updated last year
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆31Updated last year
• CMUSchwartzLab / NND
  Neural network deconvolution
  ☆8Updated 4 years ago
• YuLab-SMU / tigeR
  🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package
  ☆33Updated last month
• PansccSpat / SpatialMapESCC
  ☆17Updated 8 months ago
• junjunlab / bulkPseudotime
  Pseudotime Analysis for Bulk Data
  ☆15Updated 11 months ago