zhipenglu / CRSSANTLinks
Package for analyzing RNA crosslinking and proximity ligation data (PARIS and beyond)
☆12Updated last year
Alternatives and similar repositories for CRSSANT
Users that are interested in CRSSANT are comparing it to the libraries listed below
Sorting:
- A tool for the calculation of RNA-editing index for RNA seq data☆43Updated last year
- Estimate locus specific human LINE-1 expression.☆36Updated 2 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆75Updated 2 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 2 months ago
- ☆32Updated last year
- ☆20Updated last year
- A list of alternative splicing analysis resources☆45Updated 4 months ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆68Updated last month
- ☆30Updated 7 years ago
- Basic workflow for ATAC-seq analysis☆82Updated last year
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 5 months ago
- mgatk: mitochondrial genome analysis toolkit☆108Updated 6 months ago
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆17Updated 4 months ago
- ☆20Updated 11 months ago
- Quantification of transposable element expression using RNA-seq☆73Updated last year
- Single cell Nanopore sequencing data for Genotype and Phenotype☆54Updated 2 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated 3 weeks ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- ☆61Updated 4 years ago
- ☆58Updated 3 weeks ago
- SNV calling from single cell sequencing☆104Updated 9 months ago
- ☆94Updated last week
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 6 months ago
- Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks☆9Updated 3 years ago
- ☆75Updated 3 months ago
- RNA editing tests☆17Updated 4 years ago