GuttmanLab / sprite-pipeline
A self-contained repository of all code needed for SPRITE analysis
☆20Updated 3 years ago
Related projects: ⓘ
- Tutorial Website☆51Updated 3 years ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆43Updated 5 months ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆56Updated 10 months ago
- Genome-wide contact analysis using sklearn☆57Updated 5 months ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆63Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆43Updated 5 years ago
- Publication quality NGS track plotting☆103Updated 2 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆77Updated 2 years ago
- ☆29Updated 6 years ago
- Estimate locus specific human LINE-1 expression.☆31Updated last year
- ☆24Updated 3 years ago
- Updated DANPOS2 to work with python3☆20Updated 6 months ago
- A Perl/R pipeline for plotting metagenes☆34Updated 3 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆106Updated 3 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆64Updated 5 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆58Updated 8 months ago
- IDR☆30Updated last year
- Package for analysis and characterization of differential TADs☆22Updated 2 years ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆48Updated 7 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆61Updated last year
- ☆38Updated this week
- HiCorr: a Hi-C data bias-correction pipeline☆27Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆39Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated last year
- Links to ATAC-seq analysis tools☆49Updated 3 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆71Updated last year
- Allele-specific alignment sorting☆52Updated last year
- tools to find circRNAs in RNA-seq data☆40Updated 6 years ago
- CLIP-seq Analysis of Multi-mapped reads☆27Updated 3 years ago