GuttmanLab / sprite-pipelineLinks
A self-contained repository of all code needed for SPRITE analysis
☆21Updated 4 years ago
Alternatives and similar repositories for sprite-pipeline
Users that are interested in sprite-pipeline are comparing it to the libraries listed below
Sorting:
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆70Updated 9 months ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆47Updated last year
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- Genome-wide contact analysis using sklearn☆68Updated last year
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆75Updated 2 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆71Updated last year
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆111Updated 4 years ago
- Estimate locus specific human LINE-1 expression.☆37Updated 2 years ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆47Updated 2 months ago
- Publication quality NGS track plotting☆114Updated 3 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆89Updated 3 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 10 years ago
- ☆24Updated 4 years ago
- Lightweight converter between hic and cool contact matrices.☆74Updated last year
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 3 months ago
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆80Updated 10 months ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆72Updated last year
- An Optimized Nested TAD caller for Hi-C data☆23Updated 4 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 9 months ago
- Tutorial Website☆59Updated 4 years ago
- ☆95Updated 3 weeks ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆68Updated 2 months ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆51Updated last year
- An easy-to-use Hi-C data processing software supporting distributed computation.☆61Updated last year
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago