cbg-ethz / COMPASSLinks
☆24Updated 3 months ago
Alternatives and similar repositories for COMPASS
Users that are interested in COMPASS are comparing it to the libraries listed below
Sorting:
- Single cell Nanopore sequencing data for Genotype and Phenotype☆54Updated 6 months ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22Updated last year
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆49Updated 6 years ago
- SingleCell Nanopore sequencing data analysis☆63Updated 6 months ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆42Updated last year
- CellPhy: accurate and fast probabilistic inference of single-cell phylogenies☆20Updated 2 months ago
- ☆99Updated this week
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆81Updated 4 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated last month
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆43Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 6 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆30Updated 8 months ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆38Updated last year
- R package for large-scale CNV analysis from RNA-seq☆19Updated last year
- Docker for 4DN Hi-C processing pipeline☆60Updated last year
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆50Updated last week
- ☆39Updated 5 years ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 9 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆70Updated 9 months ago
- Micro DNA identification☆24Updated 4 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated last month
- ☆63Updated 2 months ago
- Single-cell copy number calling and event history reconstruction.☆27Updated 11 months ago
- Nextflow implementation of SpliZ☆15Updated 2 years ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆61Updated 3 months ago