☆25Aug 24, 2025Updated 9 months ago
Alternatives and similar repositories for COMPASS
Users that are interested in COMPASS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tertiary analysis package to visualize single-cell data generated by the Tapestri Platform.☆18Updated this week
- R package to analyze single cell DNA sequencing data.☆11May 1, 2026Updated 3 weeks ago
- a bioinformatics tool for simulating single-cell genome sequencing data☆10Dec 19, 2019Updated 6 years ago
- Single-cell COPy number Estimation☆18Dec 11, 2022Updated 3 years ago
- Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates☆22Jul 11, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"☆16Mar 11, 2024Updated 2 years ago
- Tumor Phylogeny Reconstruction via Integrative use of Single Cell and Bulk Sequencing Data☆11Jul 13, 2020Updated 5 years ago
- Latent spaces for single cells☆20Oct 31, 2023Updated 2 years ago
- Single-cell copy number calling and event history reconstruction.☆28May 13, 2026Updated last week
- Next-generation sequencing analysis pipelines & scrips☆10Nov 25, 2020Updated 5 years ago
- VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data☆23Oct 21, 2025Updated 7 months ago
- A robust PCA method of tumor clone and evolution inference from single-cell sequencing data.☆12May 28, 2020Updated 5 years ago
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 2 years ago
- Repository with NGSchool2022 materials☆14Sep 19, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆13May 27, 2025Updated 11 months ago
- Map single-cell transcriptomes to copy number evolutionary trees.☆14Aug 18, 2024Updated last year
- A comprehensive toolkit for single-cell methylation sequencing data analysis☆34Jan 29, 2026Updated 3 months ago
- ☆13May 11, 2026Updated last week
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆44Nov 13, 2024Updated last year
- ☆14Nov 24, 2025Updated 6 months ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Jan 16, 2024Updated 2 years ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆18Oct 25, 2024Updated last year
- sharing interactive single cell gene expression visualizations from Seurat☆13May 18, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Single Cell Analysis Automated Workflow☆28May 22, 2023Updated 3 years ago
- CellPhy: accurate and fast probabilistic inference of single-cell phylogenies☆20Jan 8, 2026Updated 4 months ago
- FISH Iterative Cell Typing☆11Mar 24, 2024Updated 2 years ago
- CellCoal: coalescent simulation of single-cell NGS genotypes☆15Feb 10, 2025Updated last year
- Custom code for processing Parse Bio snRNA-seq data generated by the Mortazavi lab at UCI☆19Oct 5, 2025Updated 7 months ago
- Quality control for phylogenetic analyses☆13Updated this week
- This is a simple introductory tutorial to help you get started with using BEAST2 and its accomplices.☆11Jul 8, 2025Updated 10 months ago
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Apr 3, 2022Updated 4 years ago
- Identifying external communication signals using single-cell transcriptomics data☆21Jun 10, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆51Jan 4, 2023Updated 3 years ago
- FREE Divergence Error-Correcting DNA Barcodes☆10Jun 23, 2018Updated 7 years ago
- ☆25Mar 3, 2020Updated 6 years ago
- A Python wrapper for opening files and folders with the native file dialog.☆19May 17, 2026Updated last week
- Git repo for CONIPHER tree building☆27Mar 20, 2025Updated last year
- ☆15Mar 13, 2026Updated 2 months ago
- A program for the analysis of single cell nanopore long read data☆21Jul 1, 2025Updated 10 months ago