cbg-ethz / COMPASS
☆19Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for COMPASS
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆32Updated 4 months ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆60Updated last year
- Tutorial Website☆53Updated 3 years ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆67Updated last year
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆37Updated last week
- Software to compute reproducibility and quality scores for Hi-C data☆44Updated 5 years ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆24Updated 3 weeks ago
- A modular, containerized pipeline for ATAC-seq data processing☆54Updated last week
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆50Updated 2 weeks ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- SNV calling from single cell sequencing☆84Updated 2 weeks ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated 6 months ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆16Updated this week
- Links to ATAC-seq analysis tools☆50Updated 3 years ago
- Reusable tools for working with next-generation sequencing (NGS) data☆11Updated last month
- Estimate locus specific human LINE-1 expression.☆32Updated 2 years ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆40Updated 2 months ago
- ☆58Updated 3 months ago
- Robust Allele Specific Quantification and quality controL☆37Updated 2 years ago
- Single-cell copy number calling and event history reconstruction.☆20Updated 3 months ago
- ☆37Updated 4 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month
- An R package to time somatic mutations☆60Updated 3 years ago
- SingleCell Nanopore sequencing data analysis☆52Updated last month
- A Perl/R pipeline for plotting metagenes☆35Updated 3 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆72Updated last year
- Nextflow implementation of SpliZ☆12Updated last year
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆50Updated 3 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 3 years ago