Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"
☆24May 10, 2025Updated last year
Alternatives and similar repositories for spectrum-tme
Users that are interested in spectrum-tme are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆34Jan 18, 2023Updated 3 years ago
- ☆15Apr 27, 2022Updated 4 years ago
- ☆23Dec 23, 2024Updated last year
- A Julia package for extracting mutation signatures using topic models☆20Feb 23, 2022Updated 4 years ago
- single cell analysis of treatment naive and treated human PDAC☆27May 27, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆21Aug 20, 2024Updated 2 years ago
- FISH Iterative Cell Typing☆11Mar 24, 2024Updated 2 years ago
- Poisson scRNA Integration of Mixed Unknown Signals☆11Oct 7, 2024Updated 2 years ago
- Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data☆38Dec 15, 2020Updated 5 years ago
- ☆13Apr 16, 2021Updated 5 years ago
- Code used to process the data of the HBCA project☆35Feb 9, 2024Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Apr 16, 2021Updated 5 years ago
- ☆13Apr 13, 2020Updated 6 years ago
- ☆52Feb 16, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆21Oct 11, 2022Updated 3 years ago
- Single-cell copy number calling and event history reconstruction.☆29Sep 3, 2026Updated last month
- Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.☆15Nov 24, 2025Updated 10 months ago
- ☆15Oct 10, 2023Updated 3 years ago
- An R package to time somatic mutations☆72Dec 12, 2020Updated 5 years ago
- tugHall: a simulator of cancer cell evolution based on the hallmarks of cancer, linked to the mutational states of tumor-related genes. T…☆13Dec 11, 2023Updated 2 years ago
- ☆21Mar 4, 2024Updated 2 years ago
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆77Dec 17, 2020Updated 5 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆32Dec 22, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Tool to create images and configuration files for Minerva-Story☆16Sep 23, 2026Updated 2 weeks ago
- ☆24Mar 29, 2023Updated 3 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆34Nov 28, 2025Updated 10 months ago
- ☆15Apr 20, 2023Updated 3 years ago
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆32Jun 19, 2024Updated 2 years ago
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 3 years ago
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- ☆49Feb 14, 2024Updated 2 years ago
- Reproduce analyses and baselines from the State paper☆18Jun 29, 2026Updated 3 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- cell type deconvolution for multi-condition bulk RNA-seq data☆37Feb 28, 2022Updated 4 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆32Aug 8, 2023Updated 3 years ago
- Pipeline for designing custom probes against human genes☆24Jan 30, 2026Updated 8 months ago
- CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential mar…☆18Jan 1, 2026Updated 9 months ago
- Toolkit for single-cell copy number analysis☆36Dec 15, 2025Updated 9 months ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- Workflow for analysis of healthy human kidney by snRNAseq and snATACseq☆25Mar 13, 2023Updated 3 years ago