shahcompbio / spectrum-tmeLinks
Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"
☆24Updated 7 months ago
Alternatives and similar repositories for spectrum-tme
Users that are interested in spectrum-tme are comparing it to the libraries listed below
Sorting:
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆43Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 10 months ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 11 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 4 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- ☆23Updated 2 years ago
- InstaPrism is an R package for fast implementation of BayesPrism☆47Updated last year
- Reproducibility notebooks for scPoli☆21Updated 2 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Hotspot cluster distance analysis in spatial transcriptomic data☆33Updated 10 months ago
- Using BCR and expression for sequence embedding☆25Updated 3 weeks ago
- ☆44Updated 2 months ago
- ☆53Updated 2 years ago
- ACTIONet single-cell analysis framework☆44Updated last year
- A repository for benchmarking spatial deconvolution and mapping tools☆35Updated 7 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Updated last year
- RNA velocity validation☆22Updated 3 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆30Updated 2 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆35Updated 4 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆24Updated 3 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆93Updated 7 months ago
- Workflow for analysis of healthy human kidney by snRNAseq and snATACseq☆25Updated 2 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆14Updated last year
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆58Updated 3 years ago
- Molecular interactions inference from single-cell multi-omics data☆30Updated 2 months ago
- ☆44Updated last year