shahcompbio / spectrum-tmeLinks
Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"
☆22Updated 3 months ago
Alternatives and similar repositories for spectrum-tme
Users that are interested in spectrum-tme are comparing it to the libraries listed below
Sorting:
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆40Updated 11 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 7 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆36Updated 2 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 2 years ago
- Information-based dimensionality reduction☆29Updated 8 months ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- ☆53Updated 2 years ago
- RNA velocity validation☆22Updated 3 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated last week
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 2 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆29Updated 2 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆54Updated 2 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆20Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated last week
- ☆22Updated 2 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- cell type specific, trait-associated gene regulation☆27Updated 4 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 5 months ago
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆12Updated 9 months ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- ☆29Updated 5 months ago
- Benchmark of GRNs using the GRETA pipeline☆27Updated this week
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆37Updated 3 weeks ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆36Updated 2 years ago
- ☆17Updated last year
- ☆26Updated 3 months ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago