shahcompbio / single_cell_pipelineLinks
Single Cell Analysis Automated Workflow
☆27Updated 2 years ago
Alternatives and similar repositories for single_cell_pipeline
Users that are interested in single_cell_pipeline are comparing it to the libraries listed below
Sorting:
- An R package to time somatic mutations☆62Updated 4 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆31Updated 3 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 5 months ago
- ☆17Updated 6 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 8 months ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated last month
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- ChIP-seq DC and QC Pipeline☆35Updated 4 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆90Updated 5 months ago
- Define regions in the genome☆32Updated 3 years ago
- Clonality Inference in Multiple Tumor Samples using Phylogeny☆15Updated 10 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆33Updated 3 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated last month
- ☆34Updated 6 years ago
- GTEx analysis scripts☆20Updated 8 years ago