shahcompbio / single_cell_pipelineLinks
Single Cell Analysis Automated Workflow
☆28Updated 2 years ago
Alternatives and similar repositories for single_cell_pipeline
Users that are interested in single_cell_pipeline are comparing it to the libraries listed below
Sorting:
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- ☆17Updated 6 years ago
- An R package to time somatic mutations☆65Updated 4 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- ATAC-seq processing pipeline☆34Updated 3 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆30Updated 8 months ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆43Updated 11 months ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- An R package for predicting HR deficiency from mutation contexts☆30Updated 9 months ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Updated 9 years ago
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆12Updated 4 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated 2 months ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆34Updated 3 years ago
- RNA editing tests☆17Updated 5 years ago