kpj / jupyfmt
The uncompromising Jupyter notebook formatter.
☆14Updated 9 months ago
Related projects ⓘ
Alternatives and complementary repositories for jupyfmt
- Snakemake-like pipeline manager for reproducible Jupyter Notebooks☆17Updated 3 years ago
- Simple installer for conda (and conda-likes)☆15Updated 9 months ago
- %conda magic for IPython☆28Updated 7 years ago
- JupyterLab renderer of dagitty causal diagrams☆20Updated last year
- Prism themes for plotnine, inspired by ggprism.☆14Updated last year
- jinja2-enabled jupyter notebooks☆35Updated 3 months ago
- PyIOmica (pyiomica) is a Python package for omics analyses.☆15Updated 2 years ago
- Exercises for training scientists to perform some RNA-seq analyses.☆11Updated 5 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- ☆11Updated last month
- CPU and GPU deterministic and therefore fully reproducible machine learning pipelines using MLflow.☆46Updated last year
- An opinionated open source deployment of jupyterhub based on an Slurm job scheduler.☆28Updated last month
- A plugin for repo2docker that outputs a directory with a shell-script and required files☆13Updated last month
- Images for Saturn Cloud☆12Updated last month
- Small template for setting up Travis CI with Python☆30Updated 7 years ago
- Manuscript describing open collaborative writing with Manubot☆48Updated 4 years ago
- The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks☆25Updated this week
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Updated 4 months ago
- The R package manager that is blazingly fast ⚡. Powered by mamba.☆72Updated 2 years ago
- A framework for data piping in python☆35Updated last year
- Collection of Sphinx extensions similar to (but more flexible than) numpydoc☆12Updated last week
- Course on good principles & practices in Data Management (https://tinyurl.com/cruk-myrd)☆17Updated last year
- Tools for building and manipulating graphs in Python☆41Updated last year
- Functional enrichment terms aggregator☆17Updated 7 months ago
- Discoverability for gene search☆12Updated last year
- Snakemake + Singularity + SLURM☆9Updated 3 years ago
- Implementation of gene-level rare coding variant association tests targeting allelic series: cases where increasingly deleterious mutatio…☆12Updated this week
- This is a short response to the 2018 RFI on NIH Strategic Plan for Data Science☆16Updated 6 years ago
- A Jupyter wrapper for the igv.js library (representation of genomic data)☆26Updated 3 years ago
- Nextflow pipeline for hyperparameter optimization of machine learning models☆19Updated 6 months ago