Alternatives and similar repositories for jupyfmt

Users that are interested in jupyfmt are comparing it to the libraries listed below

• gmiaslab / pyiomica
  PyIOmica (pyiomica) is a Python package for omics analyses.
  ☆15Updated 2 years ago
• pwwang / plotnine-prism
  Prism themes for plotnine, inspired by ggprism.
  ☆14Updated last month
• nteract / meeting-minutes
  Minutes from nteract monthly contributor meeting; reports and metrics
  ☆9Updated 3 years ago
• krassowski / jupyterlab-dagitty
  JupyterLab renderer of dagitty causal diagrams
  ☆22Updated last year
• sorgerlab / famplex
  Resources for grounding protein families and complexes from text and describing their hierarchical relationships.
  ☆18Updated 10 months ago
• Caleydo / ordino
  Target discovery platform for exploring rankings of genes, disease models, and other entities. @JKU-ICG @datavisyn
  ☆12Updated last year
• MaayanLab / appyter
  jinja2-enabled jupyter notebooks
  ☆37Updated 3 weeks ago
• mlf-core / mlf-core
  CPU and GPU deterministic and therefore fully reproducible machine learning pipelines using MLflow.
  ☆46Updated 2 years ago
• greenelab / meta-review
  Manuscript describing open collaborative writing with Manubot
  ☆49Updated 4 years ago
• conda-incubator / ensureconda
  Simple installer for conda (and conda-likes)
  ☆16Updated last week
• opentargets-archive / data_pipeline
  Code for the data processing pipeline
  ☆17Updated 3 years ago
• krassowski / nbpipeline
  Snakemake-like pipeline manager for reproducible Jupyter Notebooks
  ☆17Updated 3 years ago
• MaayanLab / FAIRshake
  ☆10Updated 6 months ago
• gyorilab / indra_db
  A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own…
  ☆16Updated 2 weeks ago
• krassowski / data-vault
  IPython magic for simple, organized, compressed and encrypted: storage & transfer of files between notebooks.
  ☆12Updated 2 years ago
• DataBiosphere / data-browser
  ☆11Updated this week
• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated last year
• bretonics / Setup
  Automate new Mac setup
  ☆19Updated 3 years ago
• VariantEffect / mavehgvs
  A specification and Python implementation for representing variants from Multiplexed Assays of Variant Effect.
  ☆11Updated last week
• broadinstitute / gene-hints
  Discoverability for gene search
  ☆12Updated 2 years ago
• cthoyt / doctoral-thesis
  📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology
  ☆29Updated 5 years ago
• saturncloud / images
  Images for Saturn Cloud
  ☆13Updated 2 months ago
• colomoto / colomoto-docker
  The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks
  ☆25Updated last month
• AlexsLemonade / RNA-Seq-Exercises
  Exercises for training scientists to perform some RNA-seq analyses.
  ☆11Updated 5 years ago
• BaderLab / netDx
  R package with netDx software and data for examples
  ☆12Updated 2 years ago
• Reproducible-Science-Curriculum / publication-RR-Jupyter
  Publication and sharing with Jupyter notebooks for reproducible research
  ☆10Updated 6 years ago
• hyhuang00 / scRNA-DR2020
  Code repository for the paper "Towards a Comprehensive Evaluation of Dimension Reduction Methods for Data Visualization"
  ☆11Updated 10 months ago
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆60Updated 4 years ago
• Schraiber / selection
  ☆14Updated 5 years ago
• NCBI-Hackathons / PubRunner
  Framework for running text mining tools on latest publications. Main page at:
  ☆14Updated 2 years ago