Alternatives and similar repositories for SGS

Users that are interested in SGS are comparing it to the libraries listed below

• cbg-ethz / SCATrEx
  Map single-cell transcriptomes to copy number evolutionary trees.
  ☆13Updated 9 months ago
• andrewcharlesjones / pcpca
  Probabilistic contrastive principal component analysis (PCPCA)
  ☆24Updated 3 years ago
• HaohanWang / thePrecisionLasso
  implementation for Precision Lasso: accounting for correlations and linear dependencies in high-dimensional genomic data
  ☆13Updated 4 years ago
• lujonathanh / BETS
  Bootstrap Elastic net regression from Time Series is a vector-autoregressive approach to causal inference from gene expression time serie…
  ☆20Updated 2 years ago
• andrewcharlesjones / cplvm
  Contrastive Poisson latent variable models (CPLVMs)
  ☆11Updated 3 years ago
• RabadanLab / randomly
  A Library for Denoising Single-Cell Data with Random Matrix Theory
  ☆37Updated last year
• skdeshpande91 / VCBART
  R implementation of VCBART
  ☆21Updated last year
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆60Updated 4 years ago
• fabian-sp / GGLasso
  A Python package for General Graphical Lasso computation
  ☆35Updated 3 months ago
• Leo-Simpson / c-lasso
  c-lasso: a Python package for constrained sparse regression and classification
  ☆32Updated 4 years ago
• BasisResearch / millipede
  A library for bayesian variable selection
  ☆28Updated 4 months ago
• ManchesterBioinference / BranchedGP
  Branching Gaussian process
  ☆30Updated 2 years ago
• anna-neufeld / datathin
  ☆14Updated last year
• lingfeiwang / findr
  Fast Inference of Networks from Directed Regulations
  ☆22Updated last year
• miicTeam / miic_R_package
  Learning causal or non-causal graphical models using information theory
  ☆27Updated 2 weeks ago
• dkobak / tsne-umap-init
  Initialization is critical for preserving global data structure in both t-SNE and UMAP
  ☆23Updated 4 years ago
• PhilBoileau / scPCA
  A toolbox for sparse contrastive principal component analysis
  ☆12Updated 3 months ago
• msesia / knockoff-filter
  A versatile interface to the knockoff methodology.
  ☆25Updated 3 years ago
• mancusolab / susiepca
  Scalable Ultra-Sparse Bayesian PCA
  ☆29Updated last year
• nyiuab / BhGLM
  BhGLM (Bayesian hierarchical GLMs and survival models)
  ☆19Updated 11 months ago
• judyboon / BASS
  A Bayesian group factor model with structured sparsity
  ☆20Updated 9 years ago
• caus-am / jci
  Code for the paper "Joint Causal Inference from Multiple Contexts" (JMLR 2020)
  ☆16Updated 4 years ago
• Murali-group / BoolODE
  Git Repo for simulating Boolean Models
  ☆34Updated 11 months ago
• stephenslab / mixsqp
  R package for fast maximum-likelihood estimation of mixture proportions using SQP.
  ☆11Updated last year
• andrewcharlesjones / multi-group-GP
  Multi-group Gaussian process (MGGP)
  ☆19Updated 10 months ago
• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆70Updated 10 months ago
• maiermarco / DirichletReg
  ☆13Updated 3 years ago
• cantinilab / OT-scOmics
  This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…
  ☆38Updated 2 years ago
• shz9 / magenpy
  Modeling and Analysis of (Statistical) Genetics data in python
  ☆16Updated 2 months ago
• cbg-ethz / scDEF
  Deep exponential families for single-cell data.
  ☆21Updated 6 months ago