The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generation, high-throughput RNA-Seq experiments.
☆30May 19, 2017Updated 9 years ago
Alternatives and similar repositories for JunctionSeq
Users that are interested in JunctionSeq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline for generating RNAseq-based cancer patient reports☆15Aug 24, 2026Updated 2 months ago
- Detecting Aberrant Splicing Events from RNA-sequencing data☆17Dec 10, 2024Updated last year
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Apr 10, 2023Updated 3 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆38May 30, 2026Updated 5 months ago
- R package to detect splicing QTLs (sQTLs)☆15Feb 28, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- Splice junction analysis and filtering from BAM files☆44Mar 31, 2022Updated 4 years ago
- Course website for Genomic Data Visualization 2022☆16Dec 28, 2022Updated 3 years ago
- Quality of RNA-Seq Toolset☆53Apr 9, 2019Updated 7 years ago
- Exon-exon splice junctions across SRA☆43Jul 30, 2021Updated 5 years ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆11Mar 13, 2021Updated 5 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆97Oct 3, 2026Updated 3 weeks ago
- MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation☆141Dec 15, 2022Updated 3 years ago
- Sample an approximate number of reads from a fastq file without reading the entire file☆11Jun 20, 2017Updated 9 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Faster manipulation of dendrogram objects in R.☆15May 22, 2015Updated 11 years ago
- Tissue-specific variant effect predictions on splicing☆44May 23, 2023Updated 3 years ago
- Precise, genome-scale, personalized, and sample-specific proteogenomic analysis☆12Nov 17, 2023Updated 2 years ago
- What's The Function of these genes?☆22Mar 17, 2017Updated 9 years ago
- ParaFly - parallel cmd processing utility☆15Aug 10, 2021Updated 5 years ago
- ☆12Jul 30, 2022Updated 4 years ago
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆20Oct 29, 2019Updated 7 years ago
- ☆20Apr 13, 2022Updated 4 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆35Sep 4, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆22Jul 4, 2017Updated 9 years ago
- An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data☆13Jul 2, 2024Updated 2 years ago
- ☆13Feb 16, 2019Updated 7 years ago
- ☆13Oct 13, 2021Updated 5 years ago
- Code to reproduce analyses from the sleuth paper☆16Nov 20, 2018Updated 7 years ago
- Explore the cancer relevance of your gene list☆55Aug 11, 2026Updated 2 months ago
- This repository is retired software☆14Oct 29, 2015Updated 11 years ago
- Visualization methods for omics dataset quality control☆11Oct 16, 2026Updated 2 weeks ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆33Jun 3, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- FRASER - Find RAre Splicing Events in RNA-seq☆58Updated this week
- Scalable RNA-seq analysis☆73Jan 12, 2021Updated 5 years ago
- ⚔️ Find splicing-led, functional changes of the proteome.☆10Jun 18, 2019Updated 7 years ago
- Filter and prioritize fusion calls☆21May 26, 2026Updated 5 months ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆31Jul 13, 2021Updated 5 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Sep 13, 2023Updated 3 years ago