hartleys / JunctionSeqLinks
The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generation, high-throughput RNA-Seq experiments.
☆28Updated 8 years ago
Alternatives and similar repositories for JunctionSeq
Users that are interested in JunctionSeq are comparing it to the libraries listed below
Sorting:
- Create QC and summary reports for Alevin output☆31Updated 2 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last week
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 3 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆38Updated last year
- A small R package to make sequencing read coverage plots in R.☆39Updated this week
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆20Updated 9 months ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Analysis for svaseq paper☆19Updated 11 years ago
- Differential expression and allelic analysis, nonparametric statistics☆29Updated 9 months ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 5 months ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data☆20Updated 4 years ago