The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generation, high-throughput RNA-Seq experiments.
☆30May 19, 2017Updated 9 years ago
Alternatives and similar repositories for JunctionSeq
Users that are interested in JunctionSeq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Faster manipulation of dendrogram objects in R.☆15May 22, 2015Updated 11 years ago
- R package to detect splicing QTLs (sQTLs)☆15Feb 28, 2021Updated 5 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Apr 10, 2023Updated 3 years ago
- Exon-exon splice junctions across SRA☆43Jul 30, 2021Updated 4 years ago
- Quality of RNA-Seq Toolset☆53Apr 9, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Detecting Aberrant Splicing Events from RNA-sequencing data☆17Dec 10, 2024Updated last year
- Splice junction analysis and filtering from BAM files☆43Mar 31, 2022Updated 4 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆95Apr 29, 2026Updated 2 months ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37May 30, 2026Updated last month
- Sample an approximate number of reads from a fastq file without reading the entire file☆11Jun 20, 2017Updated 9 years ago
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆20Oct 29, 2019Updated 6 years ago
- ☆22Jul 4, 2017Updated 9 years ago
- command lines tool to annotate miRNAs with a standard mirna/isomir naming☆20Apr 24, 2025Updated last year
- ☆13Feb 16, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Course website for Genomic Data Visualization 2022☆16Dec 28, 2022Updated 3 years ago
- Code to reproduce analyses from the sleuth paper☆16Nov 20, 2018Updated 7 years ago
- Filter and prioritize fusion calls☆20May 26, 2026Updated last month
- Scalable RNA-seq analysis☆73Jan 12, 2021Updated 5 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆30Jul 13, 2021Updated 5 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆33Jun 3, 2022Updated 4 years ago
- Bioinformatics pipeline for the generation and analysis of the DrosEU data of 2014.☆10Nov 14, 2024Updated last year
- Tissue-specific variant effect predictions on splicing☆44May 23, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆28Sep 13, 2023Updated 2 years ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- ☆12Apr 9, 2018Updated 8 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15May 22, 2019Updated 7 years ago
- R Package for performing Qst-Fst analyses☆21Nov 14, 2017Updated 8 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆14Jul 12, 2026Updated last week
- Clustering cells from single cell RNA seq assays☆46Nov 19, 2018Updated 7 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 6 years ago
- CapsNet implementation in keras for R☆12May 8, 2018Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Sep 29, 2025Updated 9 months ago
- What's The Function of these genes?☆22Mar 17, 2017Updated 9 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆34Updated this week
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- ParaFly - parallel cmd processing utility☆15Aug 10, 2021Updated 4 years ago
- Sweep Inference Framework (controlling for correlation)☆29Jul 10, 2024Updated 2 years ago
- Ten quick tips to finish that manuscript that's 90% complete.☆13Mar 30, 2022Updated 4 years ago