Alternatives and similar repositories for FlowCal

Users that are interested in FlowCal are comparing it to the libraries listed below

• scverse / pytometry
  Flow & mass cytometry analytics.
  ☆54Updated last week
• burtonrj / CytoPy
  A data-centric flow/mass cytometry automated analysis framework
  ☆42Updated 8 months ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆51Updated 2 months ago
• biothings / mygene.py
  mygene is an easy-to-use Python wrapper to access MyGene.Info services.
  ☆95Updated 9 months ago
• scverse / mudata
  Multimodal Data (.h5mu) implementation for Python
  ☆98Updated 4 months ago
• epigenelabs / inmoose
  InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.
  ☆109Updated last month
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆124Updated this week
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆56Updated 3 months ago
• saezlab / corneto
  Unified knowledge-driven network inference from omics data
  ☆85Updated 2 months ago
• harryhaller001 / keggtools
  Library for KEGG pathway enrichment analysis
  ☆16Updated 4 months ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆49Updated 2 years ago
• mousepixels / sanbomics
  bioinformatics plotting and tools
  ☆59Updated last year
• whitews / FlowKit
  A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
  ☆188Updated 4 months ago
• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆152Updated 2 weeks ago
• whitews / FlowIO
  A Python library for reading and writing Flow Cytometry Standard (FCS) files
  ☆53Updated 5 months ago
• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆47Updated 2 months ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆54Updated 5 months ago
• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆52Updated last year
• cytoflow / cytoflow
  A Python toolbox for quantitative, reproducible flow cytometry analysis
  ☆205Updated last week
• saezlab / omnipath
  Python client for the OmniPath web service
  ☆50Updated 3 months ago
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆84Updated 2 months ago
• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆110Updated this week
• lilab-bcb / harmony-pytorch
  ☆56Updated 4 months ago
• NygenAnalytics / CyteType
  Multi-agent driven cell type annotation for single-cell RNA-Seq data stored in Anndata format
  ☆46Updated last month
• broadinstitute / cell-health
  Predicting Cell Health with Morphological Profiles
  ☆37Updated 3 years ago
• Hatchin / FlowSOM
  FlowSOM algorithm in Python, using self-organizing maps and minimum spanning tree for visualization and interpretation of cytometry data
  ☆33Updated 3 years ago
• dpeerlab / PhenoGraph
  Subpopulation detection in high-dimensional single-cell data
  ☆71Updated 5 years ago
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆47Updated last week
• scverse / muon
  muon is a multimodal omics Python framework
  ☆252Updated last week
• theislab / sfaira
  data and model repository for single-cell data
  ☆135Updated last year