Alternatives and similar repositories for CytoTree

Users that are interested in CytoTree are comparing it to the libraries listed below

• ycl6 / StackedVlnPlot
  Create stacked violin plot
  ☆49Updated 3 years ago
• xmc811 / Scillus
  R Package for Single-Cell Dataset Processing and Visualization
  ☆63Updated 3 years ago
• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆67Updated last year
• Coolgenome / iTALK
  ☆61Updated 5 years ago
• JinmiaoChenLab / cytofkit
  cytofkit: an integrated flow/mass cytometry data analysis pipeline
  ☆58Updated 4 years ago
• liulab-dfci / RIMA_pipeline
  ☆81Updated last year
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆106Updated 2 years ago
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆105Updated 2 months ago
• GfellerLab / EPIC
  Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
  ☆83Updated last year
• YutingPKU / SingleCell-Multiomics
  ☆68Updated 2 years ago
• LocasaleLab / Single-Cell-Metabolic-Landscape
  Pipeline for exploring metebolic heterogeneity at single-cell resolution
  ☆73Updated 5 years ago
• rpolicastro / scProportionTest
  ☆68Updated last year
• PoisonAlien / TCGAmutations
  R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
  ☆94Updated 8 months ago
• BostonGene / MFP
  Mollecular Functional Portraits
  ☆41Updated last year
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆48Updated 2 months ago
• ggjlab / scMCA
  Mouse cell atlas
  ☆59Updated 5 years ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆74Updated 4 years ago
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆112Updated 2 months ago
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆61Updated 7 months ago
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆82Updated last month
• Moonerss / CIBERSORT
  ☆35Updated 10 months ago
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆130Updated 7 months ago
• AntonioDeFalco / SCEVAN
  R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …
  ☆107Updated 2 months ago
• campbio / decontX
  Methods for decontamination of single cell data
  ☆47Updated 4 months ago
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆105Updated 2 years ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆81Updated 9 months ago
• TheHumphreysLab / plot1cell
  ☆110Updated 3 months ago
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆37Updated 2 years ago
• BaderLab / Cytoscape_workflows
  collection of notebooks with different cytoscape workflows
  ☆50Updated 2 years ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆92Updated 4 months ago