A Toolkit for Construct Tree-shaped Trajectory for Flow and Mass Cytometry data
☆29Nov 8, 2020Updated 5 years ago
Alternatives and similar repositories for CytoTree
Users that are interested in CytoTree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An integrated analysis toolkit and pipeline for Next-Generation Sequencing (NGS) panel sequencing data☆14Aug 16, 2018Updated 8 years ago
- Correlation-based approach for identification of endocrine interactions☆14Jan 18, 2022Updated 4 years ago
- Difference in Intercellular Communication from scRNA-seq data☆28Oct 14, 2025Updated last year
- anor: an annotation and visualization system based on R and Shiny framework☆32Apr 20, 2020Updated 6 years ago
- R package for Flexible dot plots☆29Jun 19, 2022Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆16Feb 12, 2026Updated 8 months ago
- ☆17Jul 27, 2026Updated 3 months ago
- An R package to produce full spectrum flow cytometry plots outside the acquisition software.☆11May 9, 2023Updated 3 years ago
- ☆25Sep 2, 2024Updated 2 years ago
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 3 years ago
- SCIPAC (Single- Cell and bulk data-based Identifier for Phenotype Associated Cells) is a computational method that identifies cells in si…☆17Jun 30, 2024Updated 2 years ago
- A data-centric flow/mass cytometry automated analysis framework☆43Jan 22, 2025Updated last year
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆25Oct 3, 2023Updated 3 years ago
- ImmuCellAI (Immune Cell Abundance Identifier) is a tool to estimate the abundance of 24 immune cells from gene expression dataset includi…☆19May 25, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Mapping Alternative Splicing Events to pRoteins☆21Feb 8, 2022Updated 4 years ago
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …☆126Nov 10, 2025Updated 11 months ago
- To reveal the cellular heterogeneity within flow cytometry data, clustering and pseudotime analysis can be performed. Here, we demonstrat…☆14Jul 5, 2022Updated 4 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆129Updated this week
- ☆14May 23, 2016Updated 10 years ago
- Gene Expression Decomposition and Integration☆21Feb 9, 2026Updated 8 months ago
- an R package for deep mining gene co-expression networks in multi-trait expression data☆26Jan 23, 2026Updated 9 months ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆17Mar 15, 2023Updated 3 years ago
- Single-Cell Inference of Class Switch Recombination☆25Jun 19, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- an interactive explorer for flow cytometry data☆19Jul 8, 2024Updated 2 years ago
- Imputing proteomics data using deep learning models☆35Jul 8, 2026Updated 3 months ago
- R package for differential discovery analyses in high-dimensional cytometry data☆25Jul 14, 2026Updated 3 months ago
- ImmunoVerse: A pan-cancer atlas of therapeutic T cell targets☆14Oct 22, 2026Updated last week
- ☆11Sep 22, 2026Updated last month
- An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.…☆117May 5, 2026Updated 5 months ago
- Reproducibility of results/figures from scvi-hub paper☆15Apr 16, 2025Updated last year
- ☆18Jul 29, 2025Updated last year
- Code generated by Evelyn Fitzsimons (Regmefi)☆13Aug 30, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Spectral unmixing of highly mixed multispectral flow and image cytometry data.☆17Mar 15, 2023Updated 3 years ago
- Missing value imputation and evaluation, especially for metabolomics data sets☆20Jun 27, 2018Updated 8 years ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆23Mar 25, 2026Updated 7 months ago
- An R package to analyze single-cell V(D)J data☆30Nov 13, 2023Updated 2 years ago
- The files and presentation from the Cytometry Core Facility flow cytometry data analysis course in R☆26Sep 6, 2019Updated 7 years ago
- ☆35Sep 23, 2026Updated last month
- ☆33May 4, 2025Updated last year