JhuangLab / CytoTreeLinks
A Toolkit for Construct Tree-shaped Trajectory for Flow and Mass Cytometry data
☆28Updated 4 years ago
Alternatives and similar repositories for CytoTree
Users that are interested in CytoTree are comparing it to the libraries listed below
Sorting:
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆98Updated last year
- A Shiny web app for mapping datasets using Seurat v4☆132Updated 11 months ago
- Create stacked violin plot☆51Updated 3 years ago
- R Package for Single-Cell Dataset Processing and Visualization☆64Updated 4 years ago
- ☆73Updated 2 years ago
- R package for Pathway RespOnsive GENe activity inference☆108Updated 2 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆113Updated last month
- ☆62Updated 6 years ago
- Mouse cell atlas☆61Updated 5 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆127Updated 2 months ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- Assessing the purity of single cell population☆136Updated 3 years ago
- ☆86Updated last month
- ☆115Updated last month
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- A R package for advanced single cell data viz☆68Updated last month
- Convert Seurat objects to 10x Genomics Loupe files.☆139Updated 3 months ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆110Updated 2 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆29Updated 2 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆65Updated 11 months ago
- Enrichment Networks for Pathway Enrichment Analysis☆58Updated 2 years ago
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆71Updated 3 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆109Updated 5 months ago
- Multi-Omics integration and VIsualization in Cancer Subtyping☆145Updated 4 years ago
- ShinyCell2 is a lightweight R package for building interactive, shareable apps to explore single-cell multi-omics, scATAC-seq and spatial…☆37Updated 4 months ago
- ☆71Updated 3 years ago
- Updated implementation of the GSEA-P R application for modern R distributions☆97Updated 3 years ago
- R package to visualize gene expression data based on weighted kernel density estimation☆106Updated last year
- ☆32Updated 3 years ago