generalized principal component analysis (GLM-PCA) implemented in python
☆64Feb 1, 2021Updated 5 years ago
Alternatives and similar repositories for glmpca-py
Users that are interested in glmpca-py are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆97Apr 18, 2024Updated 2 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Nov 9, 2021Updated 4 years ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆18Jan 2, 2024Updated 2 years ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated 11 months ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Jun 5, 2019Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Fast algorithms for GLM-PCA.☆16Mar 12, 2025Updated last year
- Batch balanced KNN☆178Oct 11, 2023Updated 2 years ago
- ☆29Sep 4, 2023Updated 2 years ago
- Archetypal Analysis network (AAnet)☆41Jan 30, 2025Updated last year
- ☆14Jul 17, 2023Updated 2 years ago
- A python package for chromVAR☆34May 1, 2023Updated 3 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 2 years ago
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Dec 2, 2019Updated 6 years ago
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- R package for normalisation of spatial transcriptomics data☆18Jan 21, 2026Updated 4 months ago
- Auto-annotations from Mouse brain development☆12Jul 11, 2020Updated 5 years ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆41Sep 17, 2021Updated 4 years ago
- ☆47Jan 28, 2026Updated 4 months ago
- Graph matching and clustering by comparing heat kernels via optimal transport.☆26Dec 8, 2022Updated 3 years ago
- Python implementation of Bayesian hierarchical clustering and Bayesian rose trees algorithms.☆18Feb 16, 2021Updated 5 years ago
- ☆22Jun 2, 2026Updated last week
- multimodal whole slide image registration in a graph structure☆102Jul 4, 2024Updated last year
- command-line and python interface to the uniprot database☆10Jun 11, 2015Updated 11 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆19Jun 9, 2025Updated last year
- ☆14Feb 21, 2023Updated 3 years ago
- A simple, intuitive and Efficient single cell binary Data Storage format☆16Oct 10, 2019Updated 6 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆53Jan 6, 2021Updated 5 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Repository for signature genes from Immune Cell Atlas☆20Sep 25, 2019Updated 6 years ago
- A performant scientific image visualization system.☆36Jun 4, 2026Updated last week
- ☆133Nov 17, 2023Updated 2 years ago
- Scaling Single Cell Analysis to Millions of Cells☆287May 12, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- ☆44Jan 9, 2021Updated 5 years ago
- Automatically use the latest “vX.X.X” tag as version in your Python package☆13Updated this week
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆42Feb 8, 2023Updated 3 years ago
- Just another minhash implementation.☆12May 28, 2026Updated 2 weeks ago
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 2 years ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆30Oct 16, 2021Updated 4 years ago