HelenaLC / CATALYSTLinks
Cytometry dATa anALYsis Tools
☆74Updated 2 months ago
Alternatives and similar repositories for CATALYST
Users that are interested in CATALYST are comparing it to the libraries listed below
Sorting:
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆111Updated 5 years ago
- Multi-sample multi-group scRNA-seq analysis tools☆216Updated last month
- Interactively analyze single cell genomic data☆184Updated 2 weeks ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Updated last year
- Linear trajectory inference for single-cell RNA-seq☆60Updated 2 months ago
- Easy single cell analysis platform for enrichment☆207Updated 3 weeks ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆126Updated 9 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆76Updated 2 months ago
- An R interface to enrichR☆93Updated 11 months ago
- Latent Embedding Multivariate Regression☆98Updated last year
- Gene set variation analysis☆232Updated last month
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆119Updated last week
- Fast Wilcoxon and auROC☆203Updated last year
- Single Cell Cluster Evaluation☆99Updated 4 years ago
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆185Updated 4 years ago
- R package for single cell and other data analysis using diffusion maps☆92Updated 2 months ago
- A Shiny web app for mapping datasets using Seurat v4☆143Updated last year
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …☆128Updated 2 months ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆33Updated 2 weeks ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆215Updated last month
- R package for Pathway RespOnsive GENe activity inference☆113Updated 3 years ago
- Various utility functions for Seurat v5 single-cell analysis☆62Updated 2 weeks ago
- Clone of the Bioconductor repository for the SingleR package.☆199Updated 3 weeks ago
- cytofkit: an integrated flow/mass cytometry data analysis pipeline☆60Updated 5 years ago
- R client for the OmniPath web service☆152Updated last week
- A Toolkit for Construct Tree-shaped Trajectory for Flow and Mass Cytometry data☆28Updated 5 years ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆107Updated 2 years ago
- Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…☆75Updated 7 months ago
- R package for semi-supervised single-cell data integration☆95Updated last month
- Cell type pipes for R☆52Updated 2 years ago