Cytometry dATa anALYsis Tools
☆76Apr 11, 2026Updated 2 weeks ago
Alternatives and similar repositories for CATALYST
Users that are interested in CATALYST are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for differential discovery analyses in high-dimensional cytometry data☆24Feb 8, 2025Updated last year
- CellProfiler plugins for multiplexed image analysis☆12Feb 16, 2021Updated 5 years ago
- An R package to produce full spectrum flow cytometry plots outside the acquisition software.☆11May 9, 2023Updated 2 years ago
- ☆16Apr 17, 2024Updated 2 years ago
- Citrus Development Code☆31Apr 14, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 6 months ago
- cytofkit: an integrated flow/mass cytometry data analysis pipeline☆61Dec 17, 2020Updated 5 years ago
- Parallel opt-SNE implementation with Python wrapper☆38Jun 23, 2022Updated 3 years ago
- ☆25May 7, 2022Updated 3 years ago
- A tutorial for the analysis of high-dimensional flow cytometry data☆27Aug 28, 2019Updated 6 years ago
- Robust Integration of Single-Cell Cytometry Datasets☆34Updated this week
- ☆38Mar 24, 2023Updated 3 years ago
- scaffold☆18Aug 13, 2018Updated 7 years ago
- flowWorkspace☆48Feb 19, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Cytofin-an R package for CyTOF data integration☆12Jan 13, 2022Updated 4 years ago
- c++ library for representing and interacting the gated cytometry data structure☆14Jan 29, 2025Updated last year
- Representation Learning for detection of phenotype-associated cell subsets☆68Oct 24, 2020Updated 5 years ago
- R package: AutoSpill algorithm for calculating spillover coefficients to compensate or unmix high-parameter flow cytometry data☆21Jun 17, 2021Updated 4 years ago
- A GatingML Interface for Cross Platform Cytometry Data Sharing☆35Feb 10, 2026Updated 2 months ago
- A data-centric flow/mass cytometry automated analysis framework☆42Jan 22, 2025Updated last year
- R package for visualization of highly multiplexed imaging data☆36May 27, 2025Updated 11 months ago
- Marker Enrichment Modeling (MEM)☆12Nov 22, 2021Updated 4 years ago
- Multi-sample multi-group scRNA-seq analysis tools☆227Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package for pre-processing of mass and flow cytometry data☆47Sep 6, 2022Updated 3 years ago
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data☆48Feb 15, 2017Updated 9 years ago
- Imaging Mass Cytometry (IMC) file type support for napari☆13Oct 19, 2023Updated 2 years ago
- an interactive explorer for flow cytometry data☆19Jul 8, 2024Updated last year
- scDataviz: single cell dataviz and downstream analyses☆66Sep 24, 2021Updated 4 years ago
- An R package for handling and analysing imaging mass cytometry data☆31Apr 24, 2026Updated last week
- Antique or modern atlas-like depictions of non-linear dimensionality reduction for single cell data☆18Jun 19, 2025Updated 10 months ago
- ☆20May 1, 2023Updated 3 years ago
- R library to normalize cytometry data☆39Jan 16, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆12May 14, 2024Updated last year
- Huge-scale, high-performance flow cytometry clustering in Julia☆36Nov 3, 2025Updated 5 months ago
- Worked example showing how to cluster and visualize flow/mass cytometry data using FlowSOM and Rtsne☆17Jan 30, 2017Updated 9 years ago
- ☆28Jan 31, 2026Updated 3 months ago
- Flow cytometry analysis workflow. The aim of this project is to provide an intuitive workflow for the analysis of high-dimensionality cyt…☆28Updated this week
- A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.