jopo666 / HistoPrep
Preprocessing module for large histological images
☆19Updated last year
Alternatives and similar repositories for HistoPrep:
Users that are interested in HistoPrep are comparing it to the libraries listed below
- Official code for the paper "A Good Feature Extractor Is All You Need for Weakly Supervised Pathology Slide Classification"☆17Updated 6 months ago
- Re-stained whole slide image alignment☆32Updated last year
- A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.☆28Updated 9 months ago
- Python 3 library for the augmentation & normalization of H&E images☆52Updated 2 years ago
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆52Updated last year
- Histopathology Slides Preprocessing Pipeline☆36Updated 2 months ago
- Class for getting ROIs and masks from annotated pyramidal images. A work in progress.☆12Updated 3 years ago
- ☆36Updated 2 years ago
- Pipeline for computational pathology☆34Updated last year
- Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine☆30Updated 2 years ago
- DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep …☆36Updated 4 years ago
- ☆15Updated 2 years ago
- End-to-end pipeline to go from raw H&E slides to normalised extracted features for training☆23Updated 11 months ago
- GPU-accelerated stain normalization command line tool☆19Updated last year
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆51Updated 2 years ago
- source code of Inter-MIL: self-interactive multi-instance learning☆11Updated last year
- Solid Tumor Associative Modeling in Pathology☆58Updated this week
- 🔬 Code-free deep segmentation for computational pathology☆53Updated 8 months ago
- Predicting gastric cancer outcome from resected lymph node histopathology images using deep learning☆35Updated 3 years ago
- Histopathology Image Analysis☆93Updated last year
- Whole Slide Image (WSI) Processing Library for Histopathological / Cytopathological Machine Learning Tasks☆23Updated last year
- A set of codes to classify H&E slides using deep learning☆29Updated 2 years ago
- Sparse Convolutional Context-Aware Multiple Instance Learning for Whole Slide Image Classification | https://arxiv.org/abs/2105.02726☆26Updated 3 years ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆30Updated last year
- SEGmentation using Graphs with Inexact aNd Incomplete labels☆22Updated 2 years ago
- [The Lancet Digital Health, MICCAI2020 Oral] The official code of "Spatially-aware Graph Neural Networks and Cross-level Molecular Profil…☆25Updated last year
- A Python library for deep learning on whole-slide images☆51Updated 3 years ago
- Code from Foersch et al. (Under Construction / Development)☆36Updated last year
- Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis☆23Updated 10 months ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆96Updated 2 months ago