Preprocessing module for large histological images
☆22Jun 16, 2023Updated 3 years ago
Alternatives and similar repositories for HistoPrep
Users that are interested in HistoPrep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Benchmarking of deep learning and other segmentation methods for H&E images☆11Jul 6, 2023Updated 3 years ago
- Official code for the paper "A Good Feature Extractor Is All You Need for Weakly Supervised Pathology Slide Classification"☆18Aug 17, 2024Updated last year
- ☆10Jan 17, 2023Updated 3 years ago
- ☆43Nov 22, 2024Updated last year
- Poisson scRNA Integration of Mixed Unknown Signals☆11Oct 7, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python 3 library for the augmentation & normalization of H&E images☆66Sep 12, 2022Updated 3 years ago
- Class for getting ROIs and masks from annotated pyramidal images. A work in progress.☆12Jul 3, 2021Updated 5 years ago
- This is the official code for the paper Learning Represenations with Contrastive Self-Supervised Learning for Histopathology Applications☆13Aug 17, 2022Updated 3 years ago
- ☆11Jul 18, 2022Updated 4 years ago
- Image filters for digital pathology: detect pen marks, background, and artifacts. Use them for preprocessing towards deep learning☆29Sep 30, 2020Updated 5 years ago
- ☆14Aug 13, 2025Updated 11 months ago
- Encoder-Decoder Cell and Nuclei segmentation models☆106Jul 15, 2026Updated last week
- ☆19Jul 4, 2023Updated 3 years ago
- Digital Pathology Whole Slide Image Analysis Toolbox☆55Apr 2, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- MADELEINE: multi-stain slide representation learning (ECCV'24)☆67Feb 18, 2025Updated last year
- Toolbox for measuring adversarial robustness to many transforms☆19Apr 24, 2025Updated last year
- [CVPR 2026] Code for UniPath☆16Feb 26, 2026Updated 4 months ago
- Implementation of Cluster-to-Conquer: A Framework for End-to-End Multi-Instance Learning for Whole Slide Image Classification approach.☆59Oct 12, 2021Updated 4 years ago
- Implementation of the paper "A survey on attention mechanisms for medical applications: are we moving towards better algorithms?" by Tiag…☆13Sep 25, 2022Updated 3 years ago
- ☆13Dec 7, 2022Updated 3 years ago
- Python script to comvert Philips iSyntax files to OME-TIFF☆14Dec 30, 2022Updated 3 years ago
- Official code for "Self-Supervised driven Consistency Training for Annotation Efficient Histopathology Image Analysis" Published in Medic…☆62Mar 5, 2022Updated 4 years ago
- Convert jiangfeng special format kfb to common format svs☆20Jul 17, 2019Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Feature extraction from GEOJson nuclei and tissue segmentation maps☆19Jun 23, 2025Updated last year
- ☆27Nov 28, 2022Updated 3 years ago
- GPU-accelerated stain normalization command line tool☆25Oct 19, 2023Updated 2 years ago
- End-to-end pipeline to go from raw H&E slides to normalised extracted features for training☆28Mar 20, 2024Updated 2 years ago
- Winners of the TissueNet: Detect Lesions in Cervical Biopsies competition☆22Sep 7, 2023Updated 2 years ago
- ☆35Mar 30, 2025Updated last year
- CBMIL: Clustering-based Multi-instance Learning Network for Whole Slide Image Classification☆11Mar 5, 2023Updated 3 years ago
- Sparse Convolutional Context-Aware Multiple Instance Learning for Whole Slide Image Classification | https://arxiv.org/abs/2105.02726☆25Oct 11, 2021Updated 4 years ago
- ☆48Jan 19, 2026Updated 6 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Efficient subtyping of ovarian cancer histopathology whole slide images using active sampling in multiple instance learning☆10Mar 19, 2024Updated 2 years ago
- Learning domain-agnostic visual representation for computational pathology using medically-irrelevant style transfer augmentation☆28Feb 3, 2021Updated 5 years ago
- A Python library for deep learning on whole-slide images☆52Nov 5, 2021Updated 4 years ago
- ☆18Oct 12, 2019Updated 6 years ago
- Unofficial implementation for ScanNet (a fast WSI prediction method) in PyTorch.☆21Oct 3, 2023Updated 2 years ago
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆272Dec 23, 2023Updated 2 years ago
- DAS-MIL: Distilling Across Scales for MILClassification of Histological WSIs☆65Nov 29, 2024Updated last year