Alternatives and similar repositories for HistoPrep:

Users that are interested in HistoPrep are comparing it to the libraries listed below

• smujiang / Re-stained_WSIs_Registration
  Re-stained whole slide image alignment
  ☆32Updated last year
• MarvinLer / SparseConvMIL
  Sparse Convolutional Context-Aware Multiple Instance Learning for Whole Slide Image Classification | https://arxiv.org/abs/2105.02726
  ☆25Updated 3 years ago
• PathologyDataScience / NuCLS
  NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation
  ☆53Updated 2 years ago
• alexjfoote / reetoolbox
  Toolbox for measuring adversarial robustness to many transforms
  ☆19Updated 2 years ago
• superhy / LCSB-MIL
  source code of Inter-MIL: self-interactive multi-instance learning
  ☆12Updated last year
• KatherLab / end2end-WSI-preprocessing
  End-to-end pipeline to go from raw H&E slides to normalised extracted features for training
  ☆26Updated last year
• andreped / fast-stain-normalization
  GPU-accelerated stain normalization command line tool
  ☆19Updated last year
• pjl54 / WSI_handling
  Class for getting ROIs and masks from annotated pyramidal images. A work in progress.
  ☆12Updated 3 years ago
• sebastianffx / stainlib
  Python 3 library for the augmentation & normalization of H&E images
  ☆52Updated 2 years ago
• georg-wolflein / good-features
  Official code for the paper "A Good Feature Extractor Is All You Need for Weakly Supervised Pathology Slide Classification"
  ☆17Updated 7 months ago
• MaryamHaghighat / PathProfiler
  Pipeline for computational pathology
  ☆34Updated last year
• DIAGNijmegen / pathology-he-auto-augment
  H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.
  ☆52Updated last year
• vqdang / H2T
  ☆35Updated 2 years ago
• mahmoodlab / CRANE
  Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine
  ☆31Updated 2 years ago
• BiomedicalMachineLearning / HEMnet
  A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues
  ☆31Updated last month
• secrierlab / HistoMIL
  A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.
  ☆29Updated 10 months ago
• DIAGNijmegen / pathology-artifact-detection
  Quality control of whole-slide images through multi-class semantic segmentation of artifacts
  ☆30Updated last year
• SBU-BMI / quip_cancer_segmentation
  ☆16Updated 2 years ago
• jlevy44 / PathFlow-MixMatch
  Don't mix, match! Simple utilities for improved registration of Histopathology Whole Slide Images.
  ☆11Updated 4 years ago
• MHMAILab / auto_lymph
  Predicting gastric cancer outcome from resected lymph node histopathology images using deep learning
  ☆36Updated 4 years ago
• AGFoersch / MultiStainDeepLearning
  Code from Foersch et al. (Under Construction / Development)
  ☆36Updated last year
• stanfordmlgroup / DLBCL-Morph
  DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep …
  ☆36Updated 4 years ago
• andreped / NoCodeSeg
  🔬 Code-free deep segmentation for computational pathology
  ☆53Updated 9 months ago
• KatherLab / preProcessing
  ☆43Updated last year
• DIAGNijmegen / pathology-hooknet
  ☆57Updated 6 months ago
• choosehappy / QuPathGeoJSONImportExport
  Coincides with blogpost for using geojson and shapely
  ☆31Updated 4 years ago
• clemsgrs / hs2p
  Histopathology Slides Preprocessing Pipeline
  ☆36Updated last week
• mdsatria / MultiAttentionMIL
  ECCV-AIMIA 2022 paper: "Multi-Scale Attention-based Multiple Instance Learning for Classification of Multi-Gigapixel Histology Images"
  ☆12Updated last year
• KatherLab / cancer-metadata
  machine-readable information for the TCGA dataset, mirrored from other sources
  ☆17Updated 2 years ago
• trislaz / gigassl
  Repository for the Giga-SSL paper
  ☆21Updated 5 months ago