Alternatives and similar repositories for antiref:

Users that are interested in antiref are comparing it to the libraries listed below

• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆52Updated 3 months ago
• AbSciBio / igdesign
  ☆31Updated last month
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆48Updated 3 months ago
• oxpig / SPACE2
  Tool for rapid clustering of antibody models by the structure of their CDRs.
  ☆20Updated 4 months ago
• jlparkI / AntPack
  Tools for annotation, processing and ML for antibody sequences
  ☆27Updated this week
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆39Updated 3 months ago
• oxpig / ABlooper
  Tool for modelling the CDRs of antibodies
  ☆47Updated 2 years ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆63Updated 7 years ago
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆32Updated 2 years ago
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆58Updated last year
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆69Updated last month
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated 8 months ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆57Updated 3 years ago
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆42Updated last year
• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆46Updated 2 months ago
• dohlee / antiberty-pytorch
  An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
  ☆24Updated 11 months ago
• alchemab / parapred-pytorch
  PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)
  ☆18Updated last year
• wells-wood-research / de-stress
  DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
  ☆21Updated 7 months ago
• fhalab / SPGen
  ☆19Updated 3 years ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆47Updated 2 months ago
• the-protein-engineering-tournament / pet-pilot-2023
  Results and data from the pilot round of the Protein Engineering Tournament
  ☆27Updated 2 months ago
• AIforGreatGood / biotransfer
  Machine learning-driven antibody design
  ☆54Updated last year
• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆51Updated 10 months ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆34Updated last year
• conradry / prtm
  Deep learning for protein science
  ☆33Updated 9 months ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆51Updated 3 months ago
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆32Updated last year
• tymor22 / tm-vec
  ☆65Updated 5 months ago
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆92Updated last month
• oxpig / PLAbDab
  The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…
  ☆24Updated 7 months ago