Alternatives and similar repositories for cytoverse

Users that are interested in cytoverse are comparing it to the libraries listed below

• DillonHammill / CytoExploreR
  Interactive Cytometry Data Analysis
  ☆66Updated 2 months ago
• igordot / msigdbr
  MSigDB gene sets for multiple organisms in a tidy data format
  ☆84Updated 6 months ago
• federicomarini / GeneTonic
  Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
  ☆81Updated 2 weeks ago
• tidyomics / tidySingleCellExperiment
  Brings SingleCellExperiment objects to the tidyverse
  ☆37Updated 3 months ago
• tidyomics / tidySummarizedExperiment
  Brings SummarizedExperiment to the tidyverse
  ☆29Updated last month
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆70Updated 2 weeks ago
• RGLab / ggcyto
  Visualize Cytometry data with ggplot2
  ☆64Updated last month
• arnesmits / DEP
  DEP package
  ☆30Updated 3 years ago
• saeyslab / CytoNorm
  R library to normalize cytometry data
  ☆39Updated 3 weeks ago
• SaskiaFreytag / schex
  ☆75Updated 2 years ago
• KatrionaGoldmann / volcano3D
  An R package to plot interactive three-way differential expression analysis
  ☆38Updated 3 weeks ago
• LTLA / basilisk
  Clone of the Bioconductor repository for the basilisk package.
  ☆29Updated 3 months ago
• waldronlab / cBioPortalData
  Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
  ☆33Updated last week
• tidyomics / tidyomicsBlog_ARCHIVE
  The blog of tidyomics
  ☆14Updated 6 months ago
• ropensci / UCSCXenaTools
  An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.…
  ☆112Updated this week
• kevinrue / velociraptor
  Toolkit for Single-Cell Velocity
  ☆59Updated 7 months ago
• UCLouvain-CBIO / depmap
  Cancer Dependency Map package
  ☆33Updated last year
• jokergoo / InteractiveComplexHeatmap
  Make Interactive Complex Heatmaps
  ☆138Updated last week
• zdebruine / singlet
  Single-cell analysis with non-negative matrix factorization
  ☆48Updated 6 months ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆62Updated last year
• stemangiola / bioc_2020_tidytranscriptomics
  Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap
  ☆26Updated 5 years ago
• Bioconductor / SummarizedExperiment
  A container (S4 class) for matrix-like assays
  ☆36Updated this week
• Bioconductor / OrchestratingSingleCellAnalysis-release
  An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.
  ☆37Updated 2 years ago
• pachterlab / SpatialFeatureExperiment
  Extension of SpatialExperiment with sf
  ☆57Updated last month
• anhtr / HPAanalyze
  A Bioconductor package to retrieve and analyze data from the Human Protein Atlas
  ☆39Updated 2 months ago
• RGLab / flowWorkspace
  flowWorkspace
  ☆47Updated last month
• ctlab / LinSeed
  Linseed: LINear Subspace identification for gene Expresion Deconvolution
  ☆33Updated 5 months ago
• svalvaro / drawCell
  R package to create cell pictures.
  ☆136Updated 3 years ago
• gjhunt / dtangle
  Cell type deconvolution from high-throughput gene expression profiling experiments.
  ☆31Updated 5 years ago
• Bioconductor / BiocParallel
  Bioconductor facilities for parallel evaluation
  ☆69Updated 3 months ago