Alternatives and similar repositories for FlowKit

Users that are interested in FlowKit are comparing it to the libraries listed below

• whitews / FlowIO
  A Python library for reading and writing Flow Cytometry Standard (FCS) files
  ☆48Updated last month
• cytoflow / cytoflow
  A Python toolbox for quantitative, reproducible flow cytometry analysis
  ☆194Updated this week
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆117Updated last week
• scverse / pytometry
  Flow & mass cytometry analytics.
  ☆52Updated this week
• scverse / spatialdata
  An open and interoperable data framework for spatial omics data
  ☆289Updated this week
• scverse / decoupler
  Python package to perform enrichment analysis from omics data.
  ☆207Updated last week
• fish-quant / big-fish-examples
  Notebooks to illustrate how BigFISH is working.
  ☆13Updated 2 years ago
• scverse / rapids_singlecell
  Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data proces…
  ☆214Updated this week
• scverse / muon
  muon is a multimodal omics Python framework
  ☆239Updated 3 months ago
• scverse / scirpy
  A scanpy extension to analyse single-cell TCR and BCR data.
  ☆234Updated this week
• taborlab / FlowCal
  Python Flow Cytometry Calibration Library
  ☆51Updated 2 months ago
• epigenelabs / inmoose
  InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.
  ☆96Updated this week
• fish-quant / big-fish
  Toolbox for the analysis of smFISH images.
  ☆65Updated last year
• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆103Updated last week
• burtonrj / CytoPy
  A data-centric flow/mass cytometry automated analysis framework
  ☆41Updated 5 months ago
• Teichlab / celltypist
  A tool for semi-automatic cell type classification
  ☆376Updated this week
• scverse / squidpy
  Spatial Single Cell Analysis in Python
  ☆492Updated last week
• PayneLab / cptac
  Python packaging for CPTAC data
  ☆95Updated last year
• gustaveroussy / sopa
  Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…
  ☆203Updated this week
• bionumpy / bionumpy
  Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/
  ☆283Updated last week
• theislab / diffxpy
  Differential expression analysis for single-cell RNA-seq data.
  ☆198Updated 4 months ago
• dpeerlab / PhenoGraph
  Subpopulation detection in high-dimensional single-cell data
  ☆69Updated 4 years ago
• rajewsky-lab / openst
  Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab
  ☆101Updated 7 months ago
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆132Updated 3 months ago
• CellProfiler / tutorials
  CellProfiler tutorial pipelines and images
  ☆93Updated last month
• Center-for-Health-Data-Science / IntroToML
  ☆10Updated last year
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆92Updated last month
• Teichlab / SpatialDE
  Test genes for Spatial Variation
  ☆172Updated last year
• slowkow / harmonypy
  🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
  ☆218Updated 11 months ago
• broadinstitute / CellBender
  CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
  ☆333Updated 11 months ago