A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
☆233Oct 20, 2026Updated last week
Alternatives and similar repositories for FlowKit
Users that are interested in FlowKit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python library for reading and writing Flow Cytometry Standard (FCS) files☆61Oct 25, 2026Updated last week
- A Python toolbox for quantitative, reproducible flow cytometry analysis☆227Jul 17, 2026Updated 3 months ago
- FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation …☆22Updated this week
- Flow & mass cytometry analytics.☆61Updated this week
- A python package for visualization and analysis of high-throughput flow cytometry data☆129Jul 27, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A data-centric flow/mass cytometry automated analysis framework☆43Jan 22, 2025Updated last year
- Read fcs files.☆11Oct 26, 2026Updated last week
- A python parser for reading fcs files supporting FCS 2.0, 3.0, 3.1☆84Nov 27, 2024Updated last year
- Automated Cytometric Gating with Human-Level Performance Using Bivariate Segmentation☆15Sep 15, 2025Updated last year
- A framework around Tensorflow-Keras that makes it easy to train and evaluate any deep learning architecture on imaging flow cytometry dat…☆13Dec 8, 2022Updated 3 years ago
- Python Flow Cytometry Calibration Library☆57Apr 25, 2025Updated last year
- This repository extends scanpy to handle flow and mass cytometry data.☆10Aug 5, 2022Updated 4 years ago
- Optimal gating strategies for flow and mass cytometry.☆16Jul 22, 2026Updated 3 months ago
- ☆39Mar 24, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe …☆48Jul 8, 2026Updated 3 months ago
- A package that provides data analysis pipeline for flow cytometry.☆85Mar 12, 2026Updated 7 months ago
- Flow cytometry analysis workflow. The aim of this project is to provide an intuitive workflow for the analysis of high-dimensionality cyt…☆28Apr 29, 2026Updated 6 months ago
- A short script for converting .csv file data into an .fcs file, and vise versa.☆19Apr 2, 2021Updated 5 years ago
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data☆49Feb 15, 2017Updated 9 years ago
- an interactive explorer for flow cytometry data☆19Jul 8, 2024Updated 2 years ago
- Peak-based selection of high quality cytometry data☆23Feb 23, 2026Updated 8 months ago
- ☆19Mar 15, 2017Updated 9 years ago
- 🧫 Read Flow Cytometry Standard (FCS) files in Julia☆18Jun 13, 2026Updated 4 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- The complete FlowSOM package known from R, now available in Python!☆35Oct 26, 2026Updated last week
- flowLearn: Fast and precise identification and quality checking of cell populations in flow cytometry☆12Feb 15, 2018Updated 8 years ago
- RASPP algorithm for structure-guided protein recombination☆11Aug 11, 2013Updated 13 years ago
- ☆15Nov 2, 2021Updated 5 years ago
- The files and presentation from the Cytometry Core Facility flow cytometry data analysis course in R☆26Sep 6, 2019Updated 7 years ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆37Sep 30, 2026Updated last month
- A tool for semi-automatic cell type classification☆517May 22, 2026Updated 5 months ago
- Python package to generate high dimensional Flow Cytometry datasets using imputation by XGBoost regression☆13Sep 30, 2024Updated 2 years ago
- Robust Integration of Single-Cell Cytometry Datasets☆38Apr 29, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A modular tool for proportion analysis in single-cell sequencing data☆28Feb 26, 2026Updated 8 months ago
- ☆46Aug 13, 2024Updated 2 years ago
- A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.☆71Sep 19, 2025Updated last year
- An R package for analyzing high-dimensional cytometry data using the tidyverse.☆20Aug 25, 2024Updated 2 years ago
- R package: AutoSpill algorithm for calculating spillover coefficients to compensate or unmix high-parameter flow cytometry data☆23Jun 17, 2021Updated 5 years ago
- A GatingML Interface for Cross Platform Cytometry Data Sharing☆34Feb 10, 2026Updated 8 months ago
- FlowSOM algorithm in Python, using self-organizing maps and minimum spanning tree for visualization and interpretation of cytometry data☆34Jun 16, 2022Updated 4 years ago