Alternatives and similar repositories for FlowKit

Users that are interested in FlowKit are comparing it to the libraries listed below

• cytoflow / cytoflow
  A Python toolbox for quantitative, reproducible flow cytometry analysis
  ☆206Updated last month
• scverse / muon
  muon is a multimodal omics Python framework
  ☆254Updated this week
• taborlab / FlowCal
  Python Flow Cytometry Calibration Library
  ☆52Updated 6 months ago
• scverse / scirpy
  A scanpy extension to analyse single-cell TCR and BCR data.
  ☆242Updated this week
• scverse / pytometry
  Flow & mass cytometry analytics.
  ☆56Updated this week
• laminlabs / lamindb
  A data framework for biology. Makes your data queryable, traceable, reproducible, and FAIR. One API: lakehouse, lineage, feature store, o…
  ☆205Updated this week
• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆113Updated last week
• scverse / decoupler
  Python package to perform enrichment analysis from omics data.
  ☆238Updated this week
• scverse / rapids_singlecell
  rapids_singlecell: GPU-accelerated framework for scRNA analysis
  ☆261Updated this week
• PayneLab / cptac
  Python packaging for CPTAC data
  ☆107Updated last year
• burtonrj / CytoPy
  A data-centric flow/mass cytometry automated analysis framework
  ☆43Updated 9 months ago
• theislab / diffxpy
  Differential expression analysis for single-cell RNA-seq data.
  ☆204Updated 3 weeks ago
• epigenelabs / inmoose
  InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.
  ☆111Updated last week
• scverse / pertpy
  Single-cell perturbation analysis
  ☆212Updated last week
• scverse / mudata
  Multimodal Data (.h5mu) implementation for Python
  ☆98Updated 2 weeks ago
• Novartis / cellxgene-gateway
  Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…
  ☆65Updated last week
• Genentech / scimilarity
  A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…
  ☆223Updated 4 months ago
• wckdouglas / diffexpr
  Porting DESeq2 into python via rpy2
  ☆68Updated 2 years ago
• mortazavilab / PyWGCNA
  PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
  ☆277Updated 8 months ago
• colomemaria / epiScanpy
  Episcanpy: Epigenomics Single Cell Analysis in Python
  ☆148Updated 11 months ago
• whitews / FlowIO
  A Python library for reading and writing Flow Cytometry Standard (FCS) files
  ☆54Updated last week
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆127Updated last week
• slowkow / harmonypy
  🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
  ☆241Updated last year
• epigen / CellWhisperer
  CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets
  ☆116Updated this week
• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆153Updated this week
• scverse / scanpy-tutorials
  Scanpy Tutorials.
  ☆228Updated this week
• Teichlab / SpatialDE
  Test genes for Spatial Variation
  ☆175Updated last year
• Teichlab / bbknn
  Batch balanced KNN
  ☆174Updated 2 years ago
• scverse / spatialdata
  An open and interoperable data framework for spatial omics data
  ☆325Updated this week
• slowkow / awesome-vdj
  📚 Tools and databases for analyzing HLA and VDJ genes.
  ☆233Updated last month