A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
☆208Mar 30, 2026Updated last week
Alternatives and similar repositories for FlowKit
Users that are interested in FlowKit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation …☆20Nov 4, 2025Updated 5 months ago
- A Python library for reading and writing Flow Cytometry Standard (FCS) files☆56Nov 5, 2025Updated 5 months ago
- Flow & mass cytometry analytics.☆60Updated this week
- A Python toolbox for quantitative, reproducible flow cytometry analysis☆213Mar 31, 2026Updated last week
- A data-centric flow/mass cytometry automated analysis framework☆42Jan 22, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- A python package for visualization and analysis of high-throughput flow cytometry data☆127Jul 27, 2023Updated 2 years ago
- Read fcs files.☆12Nov 13, 2025Updated 4 months ago
- A python parser for reading fcs files supporting FCS 2.0, 3.0, 3.1☆82Nov 27, 2024Updated last year
- Python Flow Cytometry Calibration Library☆56Apr 25, 2025Updated 11 months ago
- ☆38Mar 24, 2023Updated 3 years ago
- ☆19Mar 15, 2017Updated 9 years ago
- A framework around Tensorflow-Keras that makes it easy to train and evaluate any deep learning architecture on imaging flow cytometry dat…☆12Dec 8, 2022Updated 3 years ago
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data☆48Feb 15, 2017Updated 9 years ago
- R library to normalize cytometry data☆39Jan 16, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆15Nov 2, 2021Updated 4 years ago
- A package that provides data analysis pipeline for flow cytometry.☆81Mar 12, 2026Updated 3 weeks ago
- A GatingML Interface for Cross Platform Cytometry Data Sharing☆34Feb 10, 2026Updated 2 months ago
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆43Updated this week
- PyIOmica (pyiomica) is a Python package for omics analyses.☆16Oct 6, 2025Updated 6 months ago
- FlowSOM algorithm in Python, using self-organizing maps and minimum spanning tree for visualization and interpretation of cytometry data☆34Jun 16, 2022Updated 3 years ago
- Peak-based selection of high quality cytometry data☆20Feb 23, 2026Updated last month
- ☆17Apr 4, 2026Updated last week
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 5 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Fit generalized linear models in python.☆28Mar 6, 2023Updated 3 years ago
- flowWorkspace☆47Feb 19, 2026Updated last month
- Cytometry by time-of-flight(CyTOF) data is very useful in studying the presence/absence of antigens/surface markers at single cell level.…☆14Jun 1, 2020Updated 5 years ago
- Profiling epigenetic age in single cells☆45Dec 11, 2021Updated 4 years ago
- Flow cytometry analysis workflow. The aim of this project is to provide an intuitive workflow for the analysis of high-dimensionality cyt…☆28Dec 17, 2025Updated 3 months ago
- A scanpy extension to analyse single-cell TCR and BCR data.☆246Updated this week
- Python package to generate high dimensional Flow Cytometry datasets using imputation by XGBoost regression☆12Sep 30, 2024Updated last year
- shrimPy: Smart High-throughput Robust Imaging & Measurement in Python☆13Mar 29, 2026Updated 2 weeks ago
- Highly scalable integration and classification of single-cell RNA sequencing data☆11Dec 27, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- 2023 Scipy Pandas tutorial☆22Jul 12, 2023Updated 2 years ago
- The complete FlowSOM package known from R, now available in Python!☆28Updated this week
- flexible CDR based distance metrics☆71Dec 16, 2025Updated 3 months ago
- An R package for analyzing high-dimensional cytometry data using the tidyverse.☆20Aug 25, 2024Updated last year
- Representation Learning for detection of phenotype-associated cell subsets☆66Oct 24, 2020Updated 5 years ago
- DEPRECATED: Store and query public TCGA data☆11Sep 15, 2016Updated 9 years ago
- Robust Integration of Single-Cell Cytometry Datasets☆33Mar 5, 2026Updated last month