mdozmorov / scHiC_notesLinks
Notes on single-cell Hi-C technologies, tools, and data
☆86Updated last year
Alternatives and similar repositories for scHiC_notes
Users that are interested in scHiC_notes are comparing it to the libraries listed below
Sorting:
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆74Updated last year
- SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.☆87Updated 3 weeks ago
- Links to ATAC-seq analysis tools☆76Updated 4 years ago
- Scripts + resources for analyzing combinatorial Hi-C data☆31Updated 6 years ago
- ☆57Updated last month
- Tools for single-cell data processing☆131Updated last year
- Basic workflow for ATAC-seq analysis☆92Updated last year
- Analysis of Paired-Tag datasets☆43Updated 2 years ago
- SNV calling from single cell sequencing☆118Updated last year
- SCSA: cell type annotation for single-cell RNA-seq data☆94Updated 2 years ago
- Efficient genotyping bi-allelic SNPs on single cells☆155Updated 2 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆91Updated 2 months ago
- ☆114Updated last year
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆111Updated 2 months ago
- Analysis pipeline for ATAC-seq data☆83Updated 2 years ago
- Repository for Cibersortx☆62Updated 4 years ago
- ☆37Updated last year
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆122Updated this week
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆75Updated 7 months ago
- ☆69Updated 2 months ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆201Updated 4 months ago
- Estimate locus specific human LINE-1 expression.☆39Updated 2 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆79Updated last month
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆56Updated 4 years ago
- Genome-wide contact analysis using sklearn☆72Updated last year
- HiCorr: a Hi-C data bias-correction pipeline☆30Updated 9 months ago
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 5 years ago
- ☆21Updated last year
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆76Updated 2 weeks ago
- FAN-C: Framework for the ANalysis of C-like data☆121Updated last year