vierstralab / motif-clusteringLinks
Clustering motif models to remove redundancy
☆43Updated 2 years ago
Alternatives and similar repositories for motif-clustering
Users that are interested in motif-clustering are comparing it to the libraries listed below
Sorting:
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 5 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated 11 months ago
- Links to ATAC-seq analysis tools☆74Updated 4 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Tutorial Website☆61Updated 4 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Full-length transcriptome splicing and mutation analysis☆85Updated last year
- Genomic coordinates of problematic genomic regions as GRanges☆49Updated 2 weeks ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆38Updated last year
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆112Updated last month
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆76Updated last week
- mgatk: mitochondrial genome analysis toolkit☆109Updated 11 months ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆56Updated 4 years ago
- Notes on ChIP-seq and other-seq-related tools☆26Updated 5 months ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆80Updated last week
- HiC for copy Number variation and Translocation detection☆40Updated 4 years ago
- Genome-wide contact analysis using sklearn☆71Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆73Updated last year
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆73Updated last year
- ATAC-seq Quality Control☆25Updated last month
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆52Updated 8 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆59Updated last month
- ATAC-seq processing pipeline☆34Updated 3 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- ☆38Updated 5 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 3 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆43Updated last year