Clustering motif models to remove redundancy
☆47Apr 12, 2023Updated 3 years ago
Alternatives and similar repositories for motif-clustering
Users that are interested in motif-clustering are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Processing and plotting tools for genomics data☆23Updated this week
- A toolset to analyze genomic footprinting data☆20Updated this week
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Sep 5, 2024Updated last year
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆16Dec 26, 2021Updated 4 years ago
- ☆35Jul 8, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Apr 26, 2022Updated 4 years ago
- Base-wise aggregation and functional prediction for human non-coding regulatory variants☆15Dec 20, 2023Updated 2 years ago
- C++ implementation of the SEM algorithm☆16Dec 18, 2024Updated last year
- Define regions in the genome☆33Mar 3, 2022Updated 4 years ago
- ☆12Oct 4, 2021Updated 4 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆250Jun 9, 2026Updated last month
- Biological sequence analysis for the modern age.☆304Updated this week
- ☆10Apr 30, 2019Updated 7 years ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆29Dec 22, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Dec 6, 2024Updated last year
- Predicting regulatory DNA elements based on epigenomic signatures☆30Jun 26, 2024Updated 2 years ago
- ☆17Sep 28, 2022Updated 3 years ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46May 1, 2026Updated 2 months ago
- Fast motif matching in R☆48Jan 24, 2024Updated 2 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Jul 21, 2021Updated 5 years ago
- my notes for scATACseq analysis☆133Apr 24, 2024Updated 2 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆42Jun 30, 2026Updated 3 weeks ago
- Jupyter notebook based genomic data visualization toolkit.☆260Jun 8, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Aug 25, 2020Updated 5 years ago
- General analysis of HiC data, including compartment A/B, domains and loops.☆14Feb 17, 2023Updated 3 years ago
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆15Jun 19, 2023Updated 3 years ago
- Single-cell epigenomics analysis tools☆323Jul 13, 2026Updated last week
- A method for analyzing scATAC-seq experiments.☆33Jun 20, 2025Updated last year
- ☆16Oct 21, 2024Updated last year
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39Apr 20, 2026Updated 3 months ago
- ☆44May 7, 2026Updated 2 months ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆29Sep 26, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆10Aug 28, 2025Updated 10 months ago
- Application for making ENCODE Blacklists☆344Apr 23, 2021Updated 5 years ago
- snakemake workflow for post-processing scATACseq data☆23Jul 15, 2020Updated 6 years ago
- Allele-specific alignment sorting☆62Jan 7, 2023Updated 3 years ago
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆102Mar 1, 2025Updated last year
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆15Feb 13, 2018Updated 8 years ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Updated this week