Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
☆64Nov 24, 2025Updated 3 months ago
Alternatives and similar repositories for higlass-python
Users that are interested in higlass-python are comparing it to the libraries listed below
Sorting:
- Server component for HiGlass that manages and serves tiled data☆21May 23, 2023Updated 2 years ago
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39May 3, 2025Updated 9 months ago
- Builds a docker container wrapping higlass-server and higlass-client in nginx☆32May 31, 2022Updated 3 years ago
- Slides and demos from our SciPyConf 2019 talk☆13Sep 28, 2021Updated 4 years ago
- HiGlass track for displaying arcs between disconnected regions☆10Dec 13, 2022Updated 3 years ago
- Python bindings to UCSC BigWig and BigBed library☆36Jan 28, 2026Updated 3 weeks ago
- Fast, flexible and extensible genome browser.☆339Feb 14, 2026Updated 2 weeks ago
- The tools for your .cool's☆160Jul 7, 2025Updated 7 months ago
- Red-C data processing☆15Apr 18, 2023Updated 2 years ago
- A Jupyter widget for comparing two embeddings with shared labels by their confusion, neighborhoods, and size.☆48Nov 14, 2024Updated last year
- A utility script to manage local docker instances of HiGlass☆24Jul 6, 2023Updated 2 years ago
- A cool place to store your Hi-C☆231Updated this week
- ☆13Sep 4, 2025Updated 5 months ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆80Jan 24, 2025Updated last year
- snakemake pipeline for Hi-C post-processing☆22Jun 27, 2024Updated last year
- Genomic interval operations on Pandas DataFrames☆189Feb 2, 2026Updated 3 weeks ago
- Lightweight converter between hic and cool contact matrices.☆74Jul 15, 2024Updated last year
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Dec 18, 2022Updated 3 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆41Jan 31, 2024Updated 2 years ago
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Jun 1, 2023Updated 2 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆125Feb 3, 2026Updated 3 weeks ago
- Visualize genomic data using webgl and webworkers, in an effort to provide a fluid, high-performance user experience.☆11May 24, 2024Updated last year
- Rusty juv☆13Nov 7, 2024Updated last year
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Jun 5, 2021Updated 4 years ago
- A library to analyse the structure of 1d loops and simulate loop extrusion by loop extruding factors.☆11Feb 10, 2025Updated last year
- ☆18Mar 12, 2024Updated last year
- Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser☆14Dec 24, 2025Updated 2 months ago
- Parse BAM and BAM index files in javascript for node and the browser☆25Feb 14, 2026Updated last week
- Buffer compression and transformation codecs☆36Feb 21, 2025Updated last year
- Blazing fast toolkit to work with .hic and .cool files☆42Feb 16, 2026Updated last week
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆13Dec 22, 2025Updated 2 months ago
- Oxbow makes genomic data ready for high-performance analytics.☆148Feb 16, 2026Updated last week
- Quick preview of HDF5 files on the command line☆13Oct 5, 2018Updated 7 years ago
- pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence …☆18Jan 21, 2025Updated last year
- Jupyter notebook based genomic data visualization toolkit.☆249Dec 4, 2025Updated 2 months ago
- A modular Hi-C mapping pipeline☆101Dec 5, 2024Updated last year
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆77Jul 22, 2025Updated 7 months ago
- ☆16Nov 3, 2025Updated 3 months ago
- Prototype your Jupyter Widget in the browser with anywidget and JupyterLite 💡☆17Apr 7, 2025Updated 10 months ago