higlass / higlass-pythonLinks
Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
☆60Updated 2 weeks ago
Alternatives and similar repositories for higlass-python
Users that are interested in higlass-python are comparing it to the libraries listed below
Sorting:
- Python bindings to UCSC BigWig and BigBed library☆35Updated 6 months ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 2 years ago
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39Updated 5 months ago
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- Builds a docker container wrapping higlass-server and higlass-client in nginx☆31Updated 3 years ago
- Architectural stripe detection from 3D genome conformation data☆18Updated last month
- Module for embedding igv.js in an IPython notebook☆78Updated 8 months ago
- a minimal, scriptable genome browser for python☆51Updated 10 months ago
- Genomic interval operations on Pandas DataFrames☆183Updated last week
- A simple pythonic interface to biomart.☆56Updated 5 years ago
- Lightweight converter between hic and cool contact matrices.☆74Updated last year
- A library to analyse the structure of 1d loops and simulate loop extrusion by loop extruding factors.☆10Updated 8 months ago
- Genome-wide contact analysis using sklearn☆69Updated last year
- dcHiC: Differential compartment analysis for Hi-C datasets☆72Updated last year
- Paired Genomic Loci Tool Suite☆32Updated 2 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆105Updated last month
- FA2021 Bootcamp course website for the incoming cohort of the Bioinformatics & Systems Biology Ph.D. program☆19Updated 4 years ago
- Red-C data processing☆15Updated 2 years ago
- A visual exploration and hypothesis testing tool for 3D genomics☆13Updated last year
- A fast dataloader for bigwig files made for machine learning☆28Updated 5 months ago
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- Python biomart API☆69Updated 2 years ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Updated 10 months ago
- Parsing tools for GTF (gene transfer format) files☆121Updated 8 months ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Updated this week
- Utilities for large scale distributed single cell data processing☆24Updated 3 months ago
- python implementation of the PAGE algorithm☆18Updated last year
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- machine-readable file format for genomic library sequence and structure☆123Updated last month