ibest / seqycleanLinks
☆26Updated 6 years ago
Alternatives and similar repositories for seqyclean
Users that are interested in seqyclean are comparing it to the libraries listed below
Sorting:
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 4 months ago
- ☆12Updated 3 months ago
- Toolkit for preparing genomes for submission to NCBI☆30Updated 3 years ago
- genomic alignment similarity search tool☆18Updated last month
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 3 years ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Output FASTQ summary statistics in JSON format☆30Updated 2 years ago
- ☆32Updated 4 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆25Updated 8 months ago
- A program for the Maximum-likelihood analysis of population genomic data.☆28Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- ☆26Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Tool for visualising assemblies.☆17Updated 9 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Long read metagenomics practical at EBAME18☆18Updated 6 years ago
- Conditional Reciprocal Best Blast☆41Updated 8 years ago
- Multiplex PCR design, in silico☆15Updated 3 months ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 3 years ago
- reference-based long read assemblies of bacterial genomes☆49Updated 3 years ago
- Select primer sets for selective whole genome amplification (SWGA)☆32Updated 6 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆40Updated 5 months ago