AIDE: annotation-assisted isoform discovery and quantification from RNA-seq data
☆16Aug 6, 2022Updated 4 years ago
Alternatives and similar repositories for AIDE
Users that are interested in AIDE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- rnalib: a python-based transcriptomics library☆14Jul 27, 2026Updated last month
- Deep learning based prediction of IsoForm FUnctions from Sequences and Expression☆15Jul 28, 2025Updated last year
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Mar 25, 2024Updated 2 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆15Aug 24, 2026Updated last week
- ☆13Dec 1, 2021Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- ☆21Mar 20, 2022Updated 4 years ago
- An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data☆13Jul 2, 2024Updated 2 years ago
- Winter 2021, GGG 298 - Tools for Data Intensive Research - UC Davis☆12Mar 10, 2021Updated 5 years ago
- RNA-binding protein motif analysis☆11Sep 29, 2025Updated 11 months ago
- End-guided RNA assembler☆15Dec 2, 2025Updated 9 months ago
- parseR: Pipeline for rna-seq analysis in R☆17Jun 23, 2017Updated 9 years ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆22Aug 13, 2026Updated 3 weeks ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Apr 10, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data☆14Jan 14, 2018Updated 8 years ago
- Shape Changes In Selecting Sample Outliers in RNA-seq☆12Jul 3, 2022Updated 4 years ago
- S3norm ver2 + IDEAS epigenetic state / master peak list☆12Sep 22, 2023Updated 2 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Nov 22, 2017Updated 8 years ago
- CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.☆25Jul 28, 2026Updated last month
- Analyse RNA feature distributions.☆21Dec 16, 2024Updated last year
- Accurate and robust imputation of scRNA-seq data☆101Aug 21, 2019Updated 7 years ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆18Jun 3, 2021Updated 5 years ago
- R package for gene selection using k-NN graphs.☆15Jun 12, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- The shiny app that accompanies the ngsReports R package☆14Jun 10, 2021Updated 5 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Nov 8, 2018Updated 7 years ago
- Comprehensive and scalable differential splicing analyses☆18Dec 19, 2025Updated 8 months ago
- Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:☆24Jun 8, 2021Updated 5 years ago
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.☆11Jul 31, 2026Updated last month
- python API to the CoGAPS NMF package☆22Jul 24, 2026Updated last month
- Very flexible tools for plotting and analyzing all kinds of RNA structure data☆16Jul 31, 2026Updated last month
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Dec 13, 2024Updated last year
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data☆13Mar 13, 2022Updated 4 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆39Aug 10, 2023Updated 3 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆54Mar 21, 2026Updated 5 months ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆31Dec 23, 2019Updated 6 years ago
- ☆21May 15, 2026Updated 3 months ago
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆45Mar 31, 2026Updated 5 months ago
- ☆13Nov 21, 2023Updated 2 years ago