Single Cell Analysis Pipelines
☆114Feb 14, 2026Updated 3 weeks ago
Alternatives and similar repositories for CeleScope
Users that are interested in CeleScope are comparing it to the libraries listed below
Sorting:
- Single-Cell Omics Preparation Entity Tools☆14Mar 23, 2021Updated 4 years ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆469Jun 6, 2025Updated 9 months ago
- Gene set variation analysis☆232Feb 25, 2026Updated last week
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆627Nov 28, 2025Updated 3 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆86Oct 6, 2023Updated 2 years ago
- ☆15Aug 17, 2023Updated 2 years ago
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆20Oct 10, 2024Updated last year
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆846Updated this week
- ☆271Oct 13, 2025Updated 4 months ago
- Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA☆27Apr 4, 2023Updated 2 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆96Nov 30, 2023Updated 2 years ago
- This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…☆89Oct 9, 2024Updated last year
- Pan-Cancer Single Cell Classifier☆84May 30, 2024Updated last year
- Quantifying metabolism activity at the single-cell resolution☆153Feb 18, 2026Updated 2 weeks ago
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 3 years ago
- Single Cell RNA PolyA Site Discovery☆11Jan 28, 2026Updated last month
- A tool for semi-automatic cell type classification☆457Updated this week
- R package for processing of GWAS output☆16Jul 9, 2024Updated last year
- ☆13Feb 14, 2023Updated 3 years ago
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆12Feb 7, 2025Updated last year
- ☆12Nov 20, 2023Updated 2 years ago
- ☆10Apr 10, 2016Updated 9 years ago
- Inferring CNV from Single-Cell RNA-Seq☆653Nov 14, 2025Updated 3 months ago
- A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis☆111Oct 16, 2023Updated 2 years ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆21Feb 24, 2026Updated last week
- ☆21Dec 23, 2024Updated last year
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆30Jun 19, 2024Updated last year
- Gene set scoring for single-cell data☆184Feb 11, 2026Updated 3 weeks ago
- iterative clustering pipeline of big single cell datasets.☆36Sep 5, 2025Updated 6 months ago
- R toolkit for single cell genomics☆2,661Feb 20, 2026Updated 2 weeks ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆323Jul 28, 2020Updated 5 years ago
- scDIOR: Single cell data IO softwaRe☆153Feb 15, 2022Updated 4 years ago
- Frequently used commands in Bioinformatics☆23Feb 9, 2026Updated 3 weeks ago
- R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.☆17Feb 18, 2026Updated 2 weeks ago
- scRNA-seq Shiny App☆14May 1, 2023Updated 2 years ago
- ☆13Jan 24, 2024Updated 2 years ago
- ☆12Nov 6, 2023Updated 2 years ago
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆185Jun 24, 2021Updated 4 years ago
- The integration of single cell rank-based gene set enrichment analysis☆147Jan 14, 2026Updated last month