Single Cell Analysis Pipelines
☆116Mar 18, 2026Updated last week
Alternatives and similar repositories for CeleScope
Users that are interested in CeleScope are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-Cell Omics Preparation Entity Tools☆14Mar 23, 2021Updated 5 years ago
- Gene set variation analysis☆235Mar 18, 2026Updated last week
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆470Jun 6, 2025Updated 9 months ago
- scLearn:Learning for single cell assignment☆35Dec 13, 2024Updated last year
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆97Nov 30, 2023Updated 2 years ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆630Mar 11, 2026Updated 2 weeks ago
- ☆276Oct 13, 2025Updated 5 months ago
- A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies☆16Feb 9, 2026Updated last month
- ☆361Dec 9, 2021Updated 4 years ago
- R toolkit for single cell genomics☆2,689Updated this week
- Single Cell RNA PolyA Site Discovery☆11Jan 28, 2026Updated last month
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆20Oct 10, 2024Updated last year
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆331Jul 28, 2020Updated 5 years ago
- This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…☆89Oct 9, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A scalable variant calling and benchmarking framework supporting both short and long reads.☆14Sep 28, 2025Updated 5 months ago
- ☆15Aug 17, 2023Updated 2 years ago
- Inferring CNV from Single-Cell RNA-Seq☆660Nov 14, 2025Updated 4 months ago
- Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA☆27Apr 4, 2023Updated 2 years ago
- Pan-Cancer Single Cell Classifier☆85May 30, 2024Updated last year
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆915Updated this week
- Reference data for cell-type assignment with clustifyr☆13Nov 3, 2022Updated 3 years ago
- Quantifying metabolism activity at the single-cell resolution☆161Feb 18, 2026Updated last month
- The integration of single cell rank-based gene set enrichment analysis☆148Jan 14, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- scDIOR: Single cell data IO softwaRe☆155Feb 15, 2022Updated 4 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆49Apr 21, 2025Updated 11 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆88Oct 6, 2023Updated 2 years ago
- Gene set scoring for single-cell data☆186Feb 11, 2026Updated last month
- A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis☆112Oct 16, 2023Updated 2 years ago
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆31Jun 19, 2024Updated last year
- R package for detecting doublets in single-cell RNA sequencing data☆534Mar 21, 2025Updated last year
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆772Jan 6, 2024Updated 2 years ago
- A tool for semi-automatic cell type classification☆460Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆12Nov 6, 2023Updated 2 years ago
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆185Jun 24, 2021Updated 4 years ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆21Mar 19, 2026Updated last week
- A deep learning architecture for robust inference and accurate prediction of cellular dynamics☆80Jul 20, 2025Updated 8 months ago
- scRNA-seq Shiny App☆14May 1, 2023Updated 2 years ago
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 3 years ago
- Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.☆26Feb 23, 2022Updated 4 years ago