Alternatives and similar repositories for CeleScope

Users that are interested in CeleScope are comparing it to the libraries listed below

• bioinfo-ibms-pumc / SCSA
  SCSA: cell type annotation for single-cell RNA-seq data
  ☆92Updated 2 years ago
• CebolaLab / ATAC-seq
  Analysis pipeline for ATAC-seq data
  ☆83Updated 2 years ago
• MGI-tech-bioinformatics / DNBelab_C_Series_HT_scRNA-analysis-software
  The official pipeline for flexible and high-performance analysis of DNBelab C Serie single-cell data.
  ☆127Updated last week
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆150Updated 3 years ago
• cellgeni / STARsolo
  wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq
  ☆75Updated 6 months ago
• STOmics / SAW
  ☆181Updated last year
• dviraran / xCell
  Cell types enrichment analysis
  ☆205Updated last year
• reskejak / ATAC-seq
  Basic workflow for ATAC-seq analysis
  ☆92Updated last year
• fl-yu / CUT-RUNTools-2.0
  CUT&RUN and CUT&Tag data processing and analysis
  ☆113Updated 9 months ago
• zktuong / dandelion
  dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data
  ☆122Updated this week
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆98Updated 2 years ago
• liulab-dfci / RIMA_pipeline
  ☆89Updated 3 months ago
• OpenGene / scrnapip
  A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis
  ☆112Updated 2 years ago
• TheHumphreysLab / plot1cell
  ☆120Updated 3 months ago
• wheaton5 / souporcell
  Clustering scRNAseq by genotypes
  ☆191Updated last month
• 10XGenomics / loupeR
  Convert Seurat objects to 10x Genomics Loupe files.
  ☆146Updated 5 months ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆152Updated last year
• single-cell-genetics / cellsnp-lite
  Efficient genotyping bi-allelic SNPs on single cells
  ☆155Updated last month
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆215Updated last year
• pachterlab / kallistobustools
  kallisto | bustools workflow for pre-processing single-cell RNA-seq data
  ☆118Updated 3 years ago
• TrinityCTAT / Trinity_CTAT
  ☆120Updated 2 years ago
• erilu / bulk-rnaseq-analysis
  A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…
  ☆112Updated 5 years ago
• sjdlabgroup / SAHMI
  ☆87Updated last year
• hbctraining / Investigating-chromatin-biology-ChIPseq
  ☆102Updated 2 months ago
• timoast / sinto
  Tools for single-cell data processing
  ☆130Updated last year
• mdozmorov / scATAC-seq_notes
  scATAC-seq data analysis tools and papers
  ☆126Updated 5 months ago
• JiekaiLab / scTE
  ☆114Updated last year
• sajuukLyu / Protocols-4pub
  Multi-omics analysis protocols by Lyu.
  ☆52Updated 2 years ago
• sib-swiss / single-cell-training
  SIB course on single cell transcriptomics by mostly using the Seurat pipeline
  ☆84Updated 4 months ago
• WXlab-NJMU / scrna-recom
  collected resource for scRNA-seq analysis
  ☆67Updated 2 years ago