singleron-RD / CeleScope
Single Cell Analysis Pipelines
☆94Updated 3 weeks ago
Alternatives and similar repositories for CeleScope:
Users that are interested in CeleScope are comparing it to the libraries listed below
- An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets☆78Updated 3 months ago
- A tool for detecting somatic variants in single cell data☆182Updated 4 months ago
- Analysis pipeline for ATAC-seq data☆44Updated last year
- ☆85Updated 6 months ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆89Updated last year
- ☆151Updated 4 months ago
- Cell types enrichment analysis☆191Updated 7 months ago
- A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…☆73Updated 4 years ago
- scDIOR: Single cell data IO softwaRe☆139Updated 2 years ago
- SCSA: cell type annotation for single-cell RNA-seq data☆85Updated last year
- A guide to using a Seurat object in conjunction with RNA Velocity☆136Updated 3 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- ☆103Updated 8 months ago
- ☆76Updated last year
- A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis☆106Updated last year
- ☆98Updated last year
- The goal of `ggVolcano` is to help users make a beautiful volcano map more easily, including general volcano plot(`ggvolcano`), gradient …☆78Updated last year
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆89Updated 3 years ago
- ☆219Updated 6 months ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆106Updated 2 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆122Updated 4 months ago
- This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset☆145Updated 4 years ago
- SIB course on single cell transcriptomics by mostly using the Seurat pipeline☆78Updated last month
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆192Updated 9 months ago
- ☆61Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆92Updated last year
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆46Updated 3 months ago
- collected resource for scRNA-seq analysis☆57Updated last year
- ☆116Updated last year
- Tools for single-cell data processing☆120Updated 7 months ago