Alternatives and similar repositories for CeleScope

Users that are interested in CeleScope are comparing it to the libraries listed below

• bioinfo-ibms-pumc / SCSA
  SCSA: cell type annotation for single-cell RNA-seq data
  ☆92Updated 2 years ago
• CebolaLab / ATAC-seq
  Analysis pipeline for ATAC-seq data
  ☆78Updated 2 years ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆204Updated last year
• MGI-tech-bioinformatics / DNBelab_C_Series_HT_scRNA-analysis-software
  An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets
  ☆119Updated 3 weeks ago
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆215Updated last year
• STOmics / SAW
  ☆175Updated last year
• cellgeni / STARsolo
  wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq
  ☆69Updated 5 months ago
• reskejak / ATAC-seq
  Basic workflow for ATAC-seq analysis
  ☆90Updated last year
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆150Updated 3 years ago
• zktuong / dandelion
  dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data
  ☆121Updated this week
• erilu / bulk-rnaseq-analysis
  A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…
  ☆102Updated 5 years ago
• fl-yu / CUT-RUNTools-2.0
  CUT&RUN and CUT&Tag data processing and analysis
  ☆114Updated 8 months ago
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆97Updated 2 years ago
• hbctraining / Investigating-chromatin-biology-ChIPseq
  ☆99Updated last month
• OpenGene / scrnapip
  A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis
  ☆112Updated 2 years ago
• TheHumphreysLab / plot1cell
  ☆115Updated 2 months ago
• liulab-dfci / RIMA_pipeline
  ☆87Updated 2 months ago
• JiekaiLab / scTE
  ☆112Updated last year
• czbiohub-sf / scell_lung_adenocarcinoma
  This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset
  ☆152Updated 4 years ago
• sjdlabgroup / SAHMI
  ☆85Updated last year
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆234Updated 2 years ago
• mdozmorov / scATAC-seq_notes
  scATAC-seq data analysis tools and papers
  ☆124Updated 4 months ago
• wheaton5 / souporcell
  Clustering scRNAseq by genotypes
  ☆190Updated this week
• single-cell-genetics / cellsnp-lite
  Efficient genotyping bi-allelic SNPs on single cells
  ☆154Updated 2 weeks ago
• 10XGenomics / loupeR
  Convert Seurat objects to 10x Genomics Loupe files.
  ☆142Updated 4 months ago
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆137Updated last year
• pachterlab / kallistobustools
  kallisto | bustools workflow for pre-processing single-cell RNA-seq data
  ☆118Updated 3 years ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆153Updated last year
• timoast / sinto
  Tools for single-cell data processing
  ☆127Updated last year
• changwn / scFEA
  single cell Flux Estimation Analysis (scFEA) Try the below web server!
  ☆135Updated 2 years ago