Single Cell Analysis Pipelines
☆122Jun 17, 2026Updated 2 weeks ago
Alternatives and similar repositories for CeleScope
Users that are interested in CeleScope are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-Cell Omics Preparation Entity Tools☆14Mar 23, 2021Updated 5 years ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆475Jun 6, 2025Updated last year
- scLearn:Learning for single cell assignment☆35Dec 13, 2024Updated last year
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆98Nov 30, 2023Updated 2 years ago
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆653Mar 11, 2026Updated 3 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆296Jun 16, 2026Updated 2 weeks ago
- A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies☆15Feb 9, 2026Updated 4 months ago
- ☆364Dec 9, 2021Updated 4 years ago
- R toolkit for single cell genomics☆2,762Jun 26, 2026Updated last week
- Single Cell RNA PolyA Site Discovery☆11Jun 17, 2026Updated 2 weeks ago
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆20Oct 10, 2024Updated last year
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆342Jul 28, 2020Updated 5 years ago
- This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…☆91Oct 9, 2024Updated last year
- A scalable variant calling and benchmarking framework supporting both short and long reads.☆14Sep 28, 2025Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆15Aug 17, 2023Updated 2 years ago
- Inferring CNV from Single-Cell RNA-Seq☆675Nov 14, 2025Updated 7 months ago
- Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA☆28Apr 4, 2023Updated 3 years ago
- Reference data for cell-type assignment with clustifyr☆13Nov 3, 2022Updated 3 years ago
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆1,090Jun 29, 2026Updated last week
- Quantifying metabolism activity at the single-cell resolution☆186Feb 18, 2026Updated 4 months ago
- scDIOR: Single cell data IO softwaRe☆156Feb 15, 2022Updated 4 years ago
- Pan-Cancer Single Cell Classifier☆87May 30, 2024Updated 2 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆49Apr 21, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆456May 26, 2026Updated last month
- The integration of single cell rank-based gene set enrichment analysis☆157Jan 14, 2026Updated 5 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆88Oct 6, 2023Updated 2 years ago
- Gene set scoring for single-cell data☆201Apr 29, 2026Updated 2 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆791Jan 6, 2024Updated 2 years ago
- A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis☆113Oct 16, 2023Updated 2 years ago
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆32Jun 19, 2024Updated 2 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆553Mar 21, 2025Updated last year
- ☆13Apr 16, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A tool for semi-automatic cell type classification☆491May 22, 2026Updated last month
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆187Jun 24, 2021Updated 5 years ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆23Jun 23, 2026Updated last week
- A deep learning architecture for robust inference and accurate prediction of cellular dynamics☆86Jul 20, 2025Updated 11 months ago
- scRNA-seq Shiny App☆14May 1, 2023Updated 3 years ago
- Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.☆26Feb 23, 2022Updated 4 years ago
- RA Synovial Single-cell Multimodal Cell Atlas☆22Mar 6, 2024Updated 2 years ago