Single Cell Analysis Pipelines
☆119May 15, 2026Updated last week
Alternatives and similar repositories for CeleScope
Users that are interested in CeleScope are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-Cell Omics Preparation Entity Tools☆14Mar 23, 2021Updated 5 years ago
- Gene set variation analysis☆242May 19, 2026Updated last week
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆472Jun 6, 2025Updated 11 months ago
- scLearn：Learning for single cell assignment☆35Dec 13, 2024Updated last year
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆98Nov 30, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆642Mar 11, 2026Updated 2 months ago
- ☆284Oct 13, 2025Updated 7 months ago
- A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies☆15Feb 9, 2026Updated 3 months ago
- ☆362Dec 9, 2021Updated 4 years ago
- R toolkit for single cell genomics☆2,731Updated this week
- Single Cell RNA PolyA Site Discovery☆11Jan 28, 2026Updated 3 months ago
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆20Oct 10, 2024Updated last year
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆339Jul 28, 2020Updated 5 years ago
- This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…☆90Oct 9, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A scalable variant calling and benchmarking framework supporting both short and long reads.☆14Sep 28, 2025Updated 7 months ago
- ☆15Aug 17, 2023Updated 2 years ago
- Inferring CNV from Single-Cell RNA-Seq☆668Nov 14, 2025Updated 6 months ago
- Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA☆27Apr 4, 2023Updated 3 years ago
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆1,000Updated this week
- Reference data for cell-type assignment with clustifyr☆13Nov 3, 2022Updated 3 years ago
- Quantifying metabolism activity at the single-cell resolution☆178Feb 18, 2026Updated 3 months ago
- scDIOR: Single cell data IO softwaRe☆156Feb 15, 2022Updated 4 years ago
- Pan-Cancer Single Cell Classifier☆86May 30, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆452May 5, 2026Updated 3 weeks ago
- Inference of cell-cell communication from single-cell RNAseq data☆49Apr 21, 2025Updated last year
- The integration of single cell rank-based gene set enrichment analysis☆156Jan 14, 2026Updated 4 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆88Oct 6, 2023Updated 2 years ago
- Gene set scoring for single-cell data☆196Apr 29, 2026Updated 3 weeks ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆787Jan 6, 2024Updated 2 years ago
- A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis☆112Oct 16, 2023Updated 2 years ago
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆32Jun 19, 2024Updated last year
- R package for detecting doublets in single-cell RNA sequencing data☆548Mar 21, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆12Apr 16, 2026Updated last month
- A tool for semi-automatic cell type classification☆483Updated this week
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆185Jun 24, 2021Updated 4 years ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆22May 17, 2026Updated last week
- A deep learning architecture for robust inference and accurate prediction of cellular dynamics☆81Jul 20, 2025Updated 10 months ago
- Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.☆26Feb 23, 2022Updated 4 years ago
- RA Synovial Single-cell Multimodal Cell Atlas☆21Mar 6, 2024Updated 2 years ago