Alternatives and similar repositories for MetaTopics:

Users that are interested in MetaTopics are comparing it to the libraries listed below

• biobakery / melonnpan
  Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
  ☆35Updated last year
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆38Updated 5 months ago
• zifanzhu / MicroPro
  A microbial profiling framework for metagenomic analysis
  ☆24Updated 4 years ago
• borenstein-lab / fishtaco
  FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…
  ☆24Updated 3 years ago
• FEI38750 / MTD
  MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
  ☆16Updated 10 months ago
• krisrs1128 / microbiome_plvm
  Code for simulations and analysis for "Latent Variable Modeling for the Microbiome."
  ☆21Updated 5 years ago
• Gibbons-Lab / mbtools
  R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
  ☆23Updated last year
• SchlossLab / Sze_Obesity_mBio_2016
  ☆12Updated 7 years ago
• jgolob / maliampi
  Maximum Likelihood Amplicon Pipeline
  ☆22Updated 10 months ago
• PhanstielLab / Sushi
  Tools for visualizing genomics data
  ☆67Updated 3 years ago
• CSB5 / shotgun-metagenomics-pipeline
  A pipeline for primary analysis of shotgun metagenomic sequencing data
  ☆11Updated 5 years ago
• btmonier / vidger
  Make rapid visualizations of RNA-seq data in R
  ☆19Updated 5 years ago
• biobakery / shortbred
  ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…
  ☆28Updated 2 months ago
• twbattaglia / koeken
  A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.
  ☆25Updated 8 years ago
• gtonkinhill / TCGA_analysis
  ☆27Updated last year
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 2 years ago
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆32Updated 2 years ago
• tengmx / rnaseqcomp
  Benchmarks for RNA-seq quantification pipelines
  ☆8Updated 5 years ago
• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆24Updated 11 months ago
• ruolin / strawberry
  A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)
  ☆23Updated 3 years ago
• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated 9 months ago
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆36Updated last week
• sandberg-lab / Spreading-Correction
  Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).
  ☆15Updated 4 years ago
• pachterlab / aggregationDE
  Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter
  ☆19Updated 7 years ago
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 6 years ago
• thelovelab / rnaseqDTU
  RNA-seq workflow: differential transcript usage
  ☆21Updated last year
• finkelsteinlab / freebarcodes
  FREE Divergence Error-Correcting DNA Barcodes
  ☆8Updated 6 years ago
• yesimon / metax_bakeoff_2019
  ☆17Updated 5 years ago
• tapj / biotyper
  an R package to biotype a community
  ☆14Updated 3 years ago
• merenlab / MerenLab-workflows
  A repository with scripts to run pipeline that are commonly used in the Meren Lab
  ☆11Updated 7 years ago