Alternatives and similar repositories for MetaTopics

Users that are interested in MetaTopics are comparing it to the libraries listed below

• mdozmorov / Microbiome_notes
  A continually expanding collection of microbiome analysis tools
  ☆18Updated 3 years ago
• krisrs1128 / microbiome_plvm
  Code for simulations and analysis for "Latent Variable Modeling for the Microbiome."
  ☆21Updated 5 years ago
• FEI38750 / MTD
  MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
  ☆16Updated last month
• cduvallet / microbiomeHD
  Cross-disease comparison of case-control gut microbiome studies
  ☆68Updated 6 years ago
• snayfach / IGGdb
  Database of genomes integrated from the gut microbiome and other environments
  ☆45Updated 2 years ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆37Updated 4 months ago
• Gibbons-Lab / mbtools
  R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
  ☆23Updated last year
• alexa-kur / miQTL_cookbook
  ☆46Updated 5 years ago
• MG-RAST / MG-RAST
  The MG-RAST Backend -- the API server
  ☆44Updated 2 years ago
• biobakery / melonnpan
  Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
  ☆38Updated last year
• wejlab / animalcules
  R shiny app for interactive microbiome analysis
  ☆55Updated 2 months ago
• zifanzhu / MicroPro
  A microbial profiling framework for metagenomic analysis
  ☆24Updated 5 years ago
• wdl2459 / ConQuR
  Batch effects removal for microbiome data via conditional quantile regression
  ☆31Updated 3 years ago
• borenstein-lab / fishtaco
  FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…
  ☆24Updated 4 years ago
• drostlab / myTAI
  Evolutionary Transcriptomics with R
  ☆45Updated this week
• twbattaglia / koeken
  A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.
  ☆26Updated 8 years ago
• emepyc / Blast2lca
  Calculates the lowest common ancestors of each query sequence in a Blast result
  ☆31Updated 7 years ago
• qiime2 / q2-feature-classifier
  QIIME 2 plugin supporting taxonomic classification
  ☆19Updated last week
• dib-lab / elvers
  (formerly eelpond) an automated RNA-Seq workflow system
  ☆27Updated 4 years ago
• malucalle / selbal
  selbal: selection of balances for microbial signatures
  ☆32Updated 6 months ago
• ArifaKhanLab / RVDB
  A reference viral database (RVDB)
  ☆26Updated 6 years ago
• biocore / oecophylla
  shotgun pipeline
  ☆12Updated 6 years ago
• yesimon / metax_bakeoff_2019
  ☆17Updated 5 years ago
• sandberg-lab / Spreading-Correction
  Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).
  ☆15Updated 4 years ago
• HCBravoLab / metagenomeSeq
  Statistical analysis for sparse high-throughput sequencing
  ☆69Updated 8 months ago
• GRONINGEN-MICROBIOME-CENTRE / DMP
  Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…
  ☆34Updated 4 years ago
• EnvGen / metagenomics-workshop
  Metagenomics Workshop
  ☆28Updated 8 years ago
• inab / BIOLITMAP
  Code for the paper "BIOLITMAP: a web-based geolocated and temporal visualization of the evolution of bioinformatics publications" in Oxfo…
  ☆20Updated 6 years ago
• mocat2 / mocat2
  Latest MOCAT2 version
  ☆19Updated 4 years ago
• ICBI / viGEN
  viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data
  ☆27Updated 10 months ago