Discovering novel cell types across heterogenous single-cell experiments
☆124Dec 8, 2022Updated 3 years ago
Alternatives and similar repositories for mars
Users that are interested in mars are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis☆53Jun 6, 2025Updated last year
- Reference mapping for single-cell genomics☆407Jun 26, 2026Updated 2 months ago
- Deep Embedding for Single-cell Clustering☆89Apr 9, 2024Updated 2 years ago
- Consistent Clusters for scRNA-seq☆11Oct 6, 2021Updated 4 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆10Aug 4, 2020Updated 6 years ago
- scLearn:Learning for single cell assignment☆35Dec 13, 2024Updated last year
- Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network☆110Jul 6, 2023Updated 3 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40May 6, 2022Updated 4 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Jun 23, 2026Updated 2 months ago
- data and model repository for single-cell data☆136Dec 21, 2023Updated 2 years ago
- Bench-marking classification tools for scRNA-seq data☆196Jun 9, 2022Updated 4 years ago
- scDeepCluster for Single Cell RNA-seq data☆107Jul 10, 2024Updated 2 years ago
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 6 years ago
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Jun 27, 2022Updated 4 years ago
- ☆72Jan 18, 2023Updated 3 years ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆230Jul 2, 2026Updated 2 months ago
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Jul 25, 2022Updated 4 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆125Jan 22, 2024Updated 2 years ago
- ☆21Aug 30, 2018Updated 8 years ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,684Updated this week
- ☆11Jan 7, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆41Sep 17, 2021Updated 4 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆244May 8, 2023Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆50Sep 1, 2023Updated 3 years ago
- ☆363Dec 9, 2021Updated 4 years ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆154Jul 25, 2024Updated 2 years ago
- Single-Cell Clustering Assessment Framework☆112Oct 27, 2023Updated 2 years ago
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆22Jul 25, 2026Updated last month
- Benchmarking analysis of data integration tools☆430Apr 27, 2026Updated 4 months ago
- software to detect doublets☆98Dec 28, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆109Jul 3, 2023Updated 3 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆52Jan 17, 2022Updated 4 years ago
- ☆15Feb 5, 2024Updated 2 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆670Jun 5, 2026Updated 2 months ago
- Simultaneous deep generative modeling and clustering of single cell genomic data☆33Nov 14, 2022Updated 3 years ago
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆91Jan 31, 2022Updated 4 years ago
- Interpretation of cell states using reference single-cell maps☆323Dec 19, 2025Updated 8 months ago